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Entropy, complexity, and Markov diagrams for random walk cancer models
The notion of entropy is used to compare the complexity associated with 12 common cancers based on metastatic tumor distribution autopsy data. We characterize power-law distributions, entropy, and Kullback-Liebler divergence associated with each primary cancer as compared with data for all cancer ty...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group
2014
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4894412/ https://www.ncbi.nlm.nih.gov/pubmed/25523357 http://dx.doi.org/10.1038/srep07558 |
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author | Newton, Paul K. Mason, Jeremy Hurt, Brian Bethel, Kelly Bazhenova, Lyudmila Nieva, Jorge Kuhn, Peter |
author_facet | Newton, Paul K. Mason, Jeremy Hurt, Brian Bethel, Kelly Bazhenova, Lyudmila Nieva, Jorge Kuhn, Peter |
author_sort | Newton, Paul K. |
collection | PubMed |
description | The notion of entropy is used to compare the complexity associated with 12 common cancers based on metastatic tumor distribution autopsy data. We characterize power-law distributions, entropy, and Kullback-Liebler divergence associated with each primary cancer as compared with data for all cancer types aggregated. We then correlate entropy values with other measures of complexity associated with Markov chain dynamical systems models of progression. The Markov transition matrix associated with each cancer is associated with a directed graph model where nodes are anatomical locations where a metastatic tumor could develop, and edge weightings are transition probabilities of progression from site to site. The steady-state distribution corresponds to the autopsy data distribution. Entropy correlates well with the overall complexity of the reduced directed graph structure for each cancer and with a measure of systemic interconnectedness of the graph, called graph conductance. The models suggest that grouping cancers according to their entropy values, with skin, breast, kidney, and lung cancers being prototypical high entropy cancers, stomach, uterine, pancreatic and ovarian being mid-level entropy cancers, and colorectal, cervical, bladder, and prostate cancers being prototypical low entropy cancers, provides a potentially useful framework for viewing metastatic cancer in terms of predictability, complexity, and metastatic potential. |
format | Online Article Text |
id | pubmed-4894412 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2014 |
publisher | Nature Publishing Group |
record_format | MEDLINE/PubMed |
spelling | pubmed-48944122016-06-10 Entropy, complexity, and Markov diagrams for random walk cancer models Newton, Paul K. Mason, Jeremy Hurt, Brian Bethel, Kelly Bazhenova, Lyudmila Nieva, Jorge Kuhn, Peter Sci Rep Article The notion of entropy is used to compare the complexity associated with 12 common cancers based on metastatic tumor distribution autopsy data. We characterize power-law distributions, entropy, and Kullback-Liebler divergence associated with each primary cancer as compared with data for all cancer types aggregated. We then correlate entropy values with other measures of complexity associated with Markov chain dynamical systems models of progression. The Markov transition matrix associated with each cancer is associated with a directed graph model where nodes are anatomical locations where a metastatic tumor could develop, and edge weightings are transition probabilities of progression from site to site. The steady-state distribution corresponds to the autopsy data distribution. Entropy correlates well with the overall complexity of the reduced directed graph structure for each cancer and with a measure of systemic interconnectedness of the graph, called graph conductance. The models suggest that grouping cancers according to their entropy values, with skin, breast, kidney, and lung cancers being prototypical high entropy cancers, stomach, uterine, pancreatic and ovarian being mid-level entropy cancers, and colorectal, cervical, bladder, and prostate cancers being prototypical low entropy cancers, provides a potentially useful framework for viewing metastatic cancer in terms of predictability, complexity, and metastatic potential. Nature Publishing Group 2014-12-19 /pmc/articles/PMC4894412/ /pubmed/25523357 http://dx.doi.org/10.1038/srep07558 Text en Copyright © 2014, Macmillan Publishers Limited. All rights reserved http://creativecommons.org/licenses/by/4.0/ This work is licensed under a Creative Commons Attribution 4.0 International License. The images or other third party material in this article are included in the article's Creative Commons license, unless indicated otherwise in the credit line; if the material is not included under the Creative Commons license, users will need to obtain permission from the license holder in order to reproduce the material. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ |
spellingShingle | Article Newton, Paul K. Mason, Jeremy Hurt, Brian Bethel, Kelly Bazhenova, Lyudmila Nieva, Jorge Kuhn, Peter Entropy, complexity, and Markov diagrams for random walk cancer models |
title | Entropy, complexity, and Markov diagrams for random walk cancer models |
title_full | Entropy, complexity, and Markov diagrams for random walk cancer models |
title_fullStr | Entropy, complexity, and Markov diagrams for random walk cancer models |
title_full_unstemmed | Entropy, complexity, and Markov diagrams for random walk cancer models |
title_short | Entropy, complexity, and Markov diagrams for random walk cancer models |
title_sort | entropy, complexity, and markov diagrams for random walk cancer models |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4894412/ https://www.ncbi.nlm.nih.gov/pubmed/25523357 http://dx.doi.org/10.1038/srep07558 |
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