Cargando…

Entropy, complexity, and Markov diagrams for random walk cancer models

The notion of entropy is used to compare the complexity associated with 12 common cancers based on metastatic tumor distribution autopsy data. We characterize power-law distributions, entropy, and Kullback-Liebler divergence associated with each primary cancer as compared with data for all cancer ty...

Descripción completa

Detalles Bibliográficos
Autores principales: Newton, Paul K., Mason, Jeremy, Hurt, Brian, Bethel, Kelly, Bazhenova, Lyudmila, Nieva, Jorge, Kuhn, Peter
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group 2014
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4894412/
https://www.ncbi.nlm.nih.gov/pubmed/25523357
http://dx.doi.org/10.1038/srep07558
_version_ 1782435671979327488
author Newton, Paul K.
Mason, Jeremy
Hurt, Brian
Bethel, Kelly
Bazhenova, Lyudmila
Nieva, Jorge
Kuhn, Peter
author_facet Newton, Paul K.
Mason, Jeremy
Hurt, Brian
Bethel, Kelly
Bazhenova, Lyudmila
Nieva, Jorge
Kuhn, Peter
author_sort Newton, Paul K.
collection PubMed
description The notion of entropy is used to compare the complexity associated with 12 common cancers based on metastatic tumor distribution autopsy data. We characterize power-law distributions, entropy, and Kullback-Liebler divergence associated with each primary cancer as compared with data for all cancer types aggregated. We then correlate entropy values with other measures of complexity associated with Markov chain dynamical systems models of progression. The Markov transition matrix associated with each cancer is associated with a directed graph model where nodes are anatomical locations where a metastatic tumor could develop, and edge weightings are transition probabilities of progression from site to site. The steady-state distribution corresponds to the autopsy data distribution. Entropy correlates well with the overall complexity of the reduced directed graph structure for each cancer and with a measure of systemic interconnectedness of the graph, called graph conductance. The models suggest that grouping cancers according to their entropy values, with skin, breast, kidney, and lung cancers being prototypical high entropy cancers, stomach, uterine, pancreatic and ovarian being mid-level entropy cancers, and colorectal, cervical, bladder, and prostate cancers being prototypical low entropy cancers, provides a potentially useful framework for viewing metastatic cancer in terms of predictability, complexity, and metastatic potential.
format Online
Article
Text
id pubmed-4894412
institution National Center for Biotechnology Information
language English
publishDate 2014
publisher Nature Publishing Group
record_format MEDLINE/PubMed
spelling pubmed-48944122016-06-10 Entropy, complexity, and Markov diagrams for random walk cancer models Newton, Paul K. Mason, Jeremy Hurt, Brian Bethel, Kelly Bazhenova, Lyudmila Nieva, Jorge Kuhn, Peter Sci Rep Article The notion of entropy is used to compare the complexity associated with 12 common cancers based on metastatic tumor distribution autopsy data. We characterize power-law distributions, entropy, and Kullback-Liebler divergence associated with each primary cancer as compared with data for all cancer types aggregated. We then correlate entropy values with other measures of complexity associated with Markov chain dynamical systems models of progression. The Markov transition matrix associated with each cancer is associated with a directed graph model where nodes are anatomical locations where a metastatic tumor could develop, and edge weightings are transition probabilities of progression from site to site. The steady-state distribution corresponds to the autopsy data distribution. Entropy correlates well with the overall complexity of the reduced directed graph structure for each cancer and with a measure of systemic interconnectedness of the graph, called graph conductance. The models suggest that grouping cancers according to their entropy values, with skin, breast, kidney, and lung cancers being prototypical high entropy cancers, stomach, uterine, pancreatic and ovarian being mid-level entropy cancers, and colorectal, cervical, bladder, and prostate cancers being prototypical low entropy cancers, provides a potentially useful framework for viewing metastatic cancer in terms of predictability, complexity, and metastatic potential. Nature Publishing Group 2014-12-19 /pmc/articles/PMC4894412/ /pubmed/25523357 http://dx.doi.org/10.1038/srep07558 Text en Copyright © 2014, Macmillan Publishers Limited. All rights reserved http://creativecommons.org/licenses/by/4.0/ This work is licensed under a Creative Commons Attribution 4.0 International License. The images or other third party material in this article are included in the article's Creative Commons license, unless indicated otherwise in the credit line; if the material is not included under the Creative Commons license, users will need to obtain permission from the license holder in order to reproduce the material. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/
spellingShingle Article
Newton, Paul K.
Mason, Jeremy
Hurt, Brian
Bethel, Kelly
Bazhenova, Lyudmila
Nieva, Jorge
Kuhn, Peter
Entropy, complexity, and Markov diagrams for random walk cancer models
title Entropy, complexity, and Markov diagrams for random walk cancer models
title_full Entropy, complexity, and Markov diagrams for random walk cancer models
title_fullStr Entropy, complexity, and Markov diagrams for random walk cancer models
title_full_unstemmed Entropy, complexity, and Markov diagrams for random walk cancer models
title_short Entropy, complexity, and Markov diagrams for random walk cancer models
title_sort entropy, complexity, and markov diagrams for random walk cancer models
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4894412/
https://www.ncbi.nlm.nih.gov/pubmed/25523357
http://dx.doi.org/10.1038/srep07558
work_keys_str_mv AT newtonpaulk entropycomplexityandmarkovdiagramsforrandomwalkcancermodels
AT masonjeremy entropycomplexityandmarkovdiagramsforrandomwalkcancermodels
AT hurtbrian entropycomplexityandmarkovdiagramsforrandomwalkcancermodels
AT bethelkelly entropycomplexityandmarkovdiagramsforrandomwalkcancermodels
AT bazhenovalyudmila entropycomplexityandmarkovdiagramsforrandomwalkcancermodels
AT nievajorge entropycomplexityandmarkovdiagramsforrandomwalkcancermodels
AT kuhnpeter entropycomplexityandmarkovdiagramsforrandomwalkcancermodels