Cargando…

Epigenome overlap measure (EPOM) for comparing tissue/cell types based on chromatin states

BACKGROUND: The dynamics of epigenomic marks in their relevant chromatin states regulate distinct gene expression patterns, biological functions and phenotypic variations in biological processes. The availability of high-throughput epigenomic data generated by next-generation sequencing technologies...

Descripción completa

Detalles Bibliográficos
Autores principales:	Li, Wei Vivian, Razaee, Zahra S., Li, Jingyi Jessica
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	BioMed Central 2016
Materias:	Proceedings
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4895267/ https://www.ncbi.nlm.nih.gov/pubmed/26817822 http://dx.doi.org/10.1186/s12864-015-2303-9

Ejemplares similares

EpOMEs act as immune suppressors in a lepidopteran insect, Spodoptera exigua
por: Vatanparast, Mohammad, et al.
Publicado: (2020)

Using epigenomics data to predict gene expression in lung cancer
por: Li, Jeffery, et al.
Publicado: (2015)

Insect immune resolution with EpOME/DiHOME and its dysregulation by their analogs leading to pathogen hypersensitivity
por: Hrithrik, Tafim Hossain, et al.
Publicado: (2023)

Systematic classification of non-coding RNAs by epigenomic similarity
por: Dozmorov, Mikhail G, et al.
Publicado: (2013)

Discovering and mapping chromatin states using a tree hidden Markov model
por: Biesinger, Jacob, et al.
Publicado: (2013)

An overlapping module identification method in protein-protein interaction networks
por: Wang, Xuesong, et al.
Publicado: (2012)

Unraveling overlapping deletions by agglomerative clustering
por: Wittler, Roland
Publicado: (2013)

Systematic chromatin state comparison of epigenomes associated with diverse properties including sex and tissue type
por: Yen, Angela, et al.
Publicado: (2015)

Exploring hierarchical and overlapping modular structure in the yeast protein interaction network
por: Liu, Changning, et al.
Publicado: (2010)

IAOseq: inferring abundance of overlapping genes using RNA-seq data
por: Sun, Hong, et al.
Publicado: (2015)

Identifying overlapping mutated driver pathways by constructing gene networks in cancer
por: Wu, Hao, et al.
Publicado: (2015)

EpiAlign: an alignment-based bioinformatic tool for comparing chromatin state sequences
por: Ge, Xinzhou, et al.
Publicado: (2019)

Genotyping common and rare variation using overlapping pool sequencing
por: He, Dan, et al.
Publicado: (2011)

Multiple genome comparison based on overlap regions of pairwise local alignments
por: Jahn, Katharina, et al.
Publicado: (2012)

NMFP: a non-negative matrix factorization based preselection method to increase accuracy of identifying mRNA isoforms from RNA-seq data
por: Ye, Yuting, et al.
Publicado: (2016)

Predicting transcription factor site occupancy using DNA sequence intrinsic and cell-type specific chromatin features
por: Kumar, Sunil, et al.
Publicado: (2016)

Epigenomics and chromatin dynamics
por: Akopian, Veronika, et al.
Publicado: (2012)

Continuous chromatin state feature annotation of the human epigenome
por: Daneshpajouh, Habib, et al.
Publicado: (2022)

Effective comparative analysis of protein-protein interaction networks by measuring the steady-state network flow using a Markov model
por: Jeong, Hyundoo, et al.
Publicado: (2016)

A deep neural network based regression model for triglyceride concentrations prediction using epigenome-wide DNA methylation profiles
por: Islam, Md. Mohaiminul, et al.
Publicado: (2018)

Accuracy improvement in protein complex prediction from protein interaction networks by refining cluster overlaps
por: Chiam, Tak Chien, et al.
Publicado: (2012)

Comparing baseline and longitudinal measures in association studies
por: Wang, Shuai, et al.
Publicado: (2014)

Epigenome wide association study of SNP–CpG interactions on changes in triglyceride levels after pharmaceutical intervention: a GAW20 analysis
por: Veenstra, Jenna, et al.
Publicado: (2018)

Super-Resolution Imaging of Higher-Order Chromatin Structures at Different Epigenomic States in Single Mammalian Cells
por: Xu, Jianquan, et al.
Publicado: (2018)

Correction to: Continuous chromatin state feature annotation of the human epigenome
Publicado: (2023)

Data for GAW20: genome-wide DNA sequence variation and epigenome-wide DNA methylation before and after fenofibrate treatment in a family study of metabolic phenotypes
por: Aslibekyan, Stella, et al.
Publicado: (2018)

How to measure image quality in tissue-based diagnosis (diagnostic surgical pathology)
por: Kayser, Klaus, et al.
Publicado: (2008)

Integrative epigenomic mapping defines four main chromatin states in Arabidopsis
por: Roudier, François, et al.
Publicado: (2011)

Annotation of chromatin states in 66 complete mouse epigenomes during development
por: van der Velde, Arjan, et al.
Publicado: (2021)

Epigenome rejuvenation: HP1β mobility as a measure of pluripotent and senescent chromatin ground states
por: Manukyan, Maria, et al.
Publicado: (2014)

Epigenomics: From Chromatin Biology to Therapeutics
por: Schmidt, Barbara
Publicado: (2013)

Chromas from chromatin: sonification of the epigenome
por: Cittaro, Davide, et al.
Publicado: (2016)

Finding potential cis-regulatory loci using allele-specific chromatin accessibility as weights in a kernel-based variance component test
por: Peralta, Juan Manuel, et al.
Publicado: (2016)

ENCODE: A Sourcebook of Epigenomes and Chromatin Language
por: Yavartanoo, Maryam, et al.
Publicado: (2013)

Retention of the Native Epigenome in Purified Mammalian Chromatin
por: Ehrensberger, Andreas H., et al.
Publicado: (2015)

A mixture model for expression deconvolution from RNA-seq in heterogeneous tissues
por: Li, Yi, et al.
Publicado: (2013)

A statistical simulator scDesign for rational scRNA-seq experimental design
por: Li, Wei Vivian, et al.
Publicado: (2019)

Genome scan linkage analysis comparing microsatellites and single-nucleotide polymorphisms markers for two measures of alcoholism in chromosomes 1, 4, and 7
por: Chen, Guanjie, et al.
Publicado: (2005)

Comparing genomic and epigenomic features across species using the WashU Comparative Epigenome Browser
por: Zhuo, Xiaoyu, et al.
Publicado: (2023)

Identification of transcription factor's targets using tissue-specific transcriptomic data in Arabidopsis thaliana
por: Srivastava, Gyan Prakash, et al.
Publicado: (2010)

Cannot write session to /tmp/vufind_sessions/sess_0eu8q39r3ol9utltg1mkmngj33