Cargando…

Transcriptome sequencing based annotation and homologous evidence based scaffolding of Anguilla japonica draft genome

BACKGROUND: Anguilla japonica (Japanese eel) is currently one of the most important research subjects in eastern Asia aquaculture. Enigmatic life cycle of the organism makes study of artificial reproduction extremely limited. Henceforth genomic and transcriptomic resources of eels are urgently neede...

Descripción completa

Detalles Bibliográficos
Autores principales:	Liu, Yu-Chen, Hsu, Sheng-Da, Chou, Chih-Hung, Huang, Wei-Yun, Chen, Yu-Hung, Liu, Chia-Yu, Lyu, Guan-Jay, Huang, Shao-Zhen, Aganezov, Sergey, Alekseyev, Max A., Hsiao, Chung-Der, Huang, Hsien-Da
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	BioMed Central 2016
Materias:	Proceedings
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4895481/ https://www.ncbi.nlm.nih.gov/pubmed/26818233 http://dx.doi.org/10.1186/s12864-015-2306-6

Ejemplares similares

On pairwise distances and median score of three genomes under DCJ
por: Aganezov, Sergey, et al.
Publicado: (2012)

Sympatric Spawning but Allopatric Distribution of Anguilla japonica and Anguilla marmorata : Temperature- and Oceanic Current-Dependent Sieving
por: Han, Yu-San, et al.
Publicado: (2012)

CAMSA: a tool for comparative analysis and merging of scaffold assemblies
por: Aganezov, Sergey S., et al.
Publicado: (2017)

Spatial learning in Japanese eels (Anguilla japonica)
por: Watanabe, Shigeru, et al.
Publicado: (2019)

Morphological and Allometric Changes in Anguilla japonica Larvae
por: Shin, Min-Gyu, et al.
Publicado: (2022)

A computational approach for identifying microRNA-target interactions using high-throughput CLIP and PAR-CLIP sequencing
por: Chou, Chih-Hung, et al.
Publicado: (2013)

Phylogenetic analysis of the complete mitochondrial genome of Anguilla japonica (Anguilliformes, Anguillidae)
por: Zhu, Kehua, et al.
Publicado: (2018)

FastAnnotator- an efficient transcript annotation web tool
por: Chen, Ting-Wen, et al.
Publicado: (2012)

Ribose operon repressor (RbsR) contributes to the adhesion of Aeromonas hydrophila to Anguilla japonica mucus
por: Lin, Guifang, et al.
Publicado: (2017)

TAC3/TACR3 System Function in the Catadromous Migration Teleost, Anguilla japonica
por: Zuo, Chenpeng, et al.
Publicado: (2022)

Soy Isoflavones Induce Feminization of Japanese Eel (Anguilla japonica)
por: Inaba, Hiroyuki, et al.
Publicado: (2022)

Effect of ENSO events on larval and juvenile duration and transport of Japanese eel (Anguilla japonica)
por: Hsiung, Kuan-Mei, et al.
Publicado: (2018)

Draft Genome Sequence of a Novel Picornavirus Isolated from Japanese Eel (Anguilla japonica)
por: Terashima, Sachiko, et al.
Publicado: (2020)

Heterosporis anguillarum infections in farm cultured eels (Anguilla japonica) in Korea
por: Joh, Seong Joon, et al.
Publicado: (2007)

Evaluation of Multi-Scale Climate Effects on Annual Recruitment Levels of the Japanese Eel, Anguilla japonica, to Taiwan
por: Tzeng, Wann-Nian, et al.
Publicado: (2012)

A combination mode of climate variability responsible for extremely poor recruitment of the Japanese eel (Anguilla japonica)
por: Lin, Yong-Fu, et al.
Publicado: (2017)

Statistical algorithms for ontology-based annotation of scientific literature
por: Chakrabarti, Chayan, et al.
Publicado: (2014)

Detection of Japanese eel endothelial cells-infecting virus in Anguilla japonica elvers
por: OKAZAKI, Sachiko, et al.
Publicado: (2015)

Morphological and Molecular Gonadal Sex Differentiation in the Wild Japanese eel Anguilla japonica
por: Horiuchi, Moemi, et al.
Publicado: (2022)

Fast subcellular localization by cascaded fusion of signal-based and homology-based methods
por: Mak, Man-Wai, et al.
Publicado: (2011)

Inferring homologous protein-protein interactions through pair position specific scoring matrix
por: Lin, Chun-Yu, et al.
Publicado: (2013)

Data for transcriptomic and iTRAQ proteomic analysis of Anguilla japonica gills in response to osmotic stress
por: Tse, William Ka Fai, et al.
Publicado: (2015)

ILP-based maximum likelihood genome scaffolding
por: Lindsay, James, et al.
Publicado: (2014)

Annotation of SBML models through rule-based semantic integration
por: Lister, Allyson L, et al.
Publicado: (2010)

An open-source, MATLAB based annotation tool for virtual slides
por: Turkki, Riku, et al.
Publicado: (2013)

Genome-scale NCRNA homology search using a Hamming distance-based filtration strategy
por: Sun, Yanni, et al.
Publicado: (2012)

Sequencing, de novo annotation and analysis of the first Anguilla anguilla transcriptome: EeelBase opens new perspectives for the study of the critically endangered european eel
por: Coppe, Alessandro, et al.
Publicado: (2010)

Identification of conserved gene clusters in multiple genomes based on synteny and homology
por: Sarkar, Anasua, et al.
Publicado: (2011)

Homology-based inference sets the bar high for protein function prediction
por: Hamp, Tobias, et al.
Publicado: (2013)

BOWiki: an ontology-based wiki for annotation of data and integration of knowledge in biology
por: Hoehndorf, Robert, et al.
Publicado: (2009)

Ion annotation-assisted analysis of LC-MS based metabolomic experiment
por: Varghese, Rency S, et al.
Publicado: (2012)

First artificial hybrid of the eel species Anguilla australis and Anguilla anguilla
por: Burgerhout, Erik, et al.
Publicado: (2011)

Development and characterization of a new cell line derived from European eel Anguilla anguilla kidney
por: Chen, Bin, et al.
Publicado: (2018)

Conceptualization of molecular findings by mining gene annotations
por: Chen, Vicky, et al.
Publicado: (2013)

North Equatorial Current and Kuroshio velocity variations affect body length and distribution of the Japanese eel Anguilla japonica in Taiwan and Japan
por: Hsiung, Kuan-Mei, et al.
Publicado: (2022)

Towards a semi-automatic functional annotation tool based on decision-tree techniques
por: Azé, Jérôme, et al.
Publicado: (2008)

MetaCluster-TA: taxonomic annotation for metagenomic data based on assembly-assisted binning
por: Wang, Yi, et al.
Publicado: (2014)

Inferring robust gene networks from expression data by a sensitivity-based incremental evolution method
por: Hsiao, Yu-Ting, et al.
Publicado: (2012)

A sequence-based hybrid predictor for identifying conformationally ambivalent regions in proteins
por: Liu, Yu-Cheng, et al.
Publicado: (2009)

Expression and localization of aquaporin 1b during oocyte development in the Japanese eel (Anguilla japonica)
por: Kagawa, Hirohiko, et al.
Publicado: (2011)

Cannot write session to /tmp/vufind_sessions/sess_d38hghkhsksm5r9cdaf9rsq0ev