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Distribution of gene mutations in sporadic congenital cataract in a Han Chinese population
PURPOSE: This study aimed to investigate the genetic effects underlying non-familial sporadic congenital cataract (SCC). METHODS: We collected DNA samples from 74 patients with SCC and 20 patients with traumatic cataract (TC) in an age-matched group and performed genomic sequencing of 61 lens-relate...
Autores principales: | , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Molecular Vision
2016
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4896834/ https://www.ncbi.nlm.nih.gov/pubmed/27307692 |
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author | Li, Dan Wang, Siying Ye, Hongfei Tang, Yating Qiu, Xiaodi Fan, Qi Rong, Xianfang Liu, Xin Chen, Yuhong Yang, Jin Lu, Yi |
author_facet | Li, Dan Wang, Siying Ye, Hongfei Tang, Yating Qiu, Xiaodi Fan, Qi Rong, Xianfang Liu, Xin Chen, Yuhong Yang, Jin Lu, Yi |
author_sort | Li, Dan |
collection | PubMed |
description | PURPOSE: This study aimed to investigate the genetic effects underlying non-familial sporadic congenital cataract (SCC). METHODS: We collected DNA samples from 74 patients with SCC and 20 patients with traumatic cataract (TC) in an age-matched group and performed genomic sequencing of 61 lens-related genes with target region capture and next-generation sequencing (NGS). The suspected SCC variants were validated with MassARRAY and Sanger sequencing. DNA samples from 103 healthy subjects were used as additional controls in the confirmation examination. RESULTS: By filtering against common variants in public databases and those associated with TC cases, we identified 23 SCC-specific variants in 17 genes from 19 patients, which were predicted to be functional. These mutations were further confirmed by examination of the 103 healthy controls. Among the mutated genes, CRYBB3 had the highest mutation frequency with mutations detected four times in four patients, followed by EPHA2, NHS, and WDR36, the mutation of which were detected two times in two patients. We observed that the four patients with CRYBB3 mutations had three different cataract phenotypes. CONCLUSIONS: From this study, we concluded the clinical and genetic heterogeneity of SCC. This is the first study to report broad spectrum genotyping for patients with SCC. |
format | Online Article Text |
id | pubmed-4896834 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | Molecular Vision |
record_format | MEDLINE/PubMed |
spelling | pubmed-48968342016-06-15 Distribution of gene mutations in sporadic congenital cataract in a Han Chinese population Li, Dan Wang, Siying Ye, Hongfei Tang, Yating Qiu, Xiaodi Fan, Qi Rong, Xianfang Liu, Xin Chen, Yuhong Yang, Jin Lu, Yi Mol Vis Research Article PURPOSE: This study aimed to investigate the genetic effects underlying non-familial sporadic congenital cataract (SCC). METHODS: We collected DNA samples from 74 patients with SCC and 20 patients with traumatic cataract (TC) in an age-matched group and performed genomic sequencing of 61 lens-related genes with target region capture and next-generation sequencing (NGS). The suspected SCC variants were validated with MassARRAY and Sanger sequencing. DNA samples from 103 healthy subjects were used as additional controls in the confirmation examination. RESULTS: By filtering against common variants in public databases and those associated with TC cases, we identified 23 SCC-specific variants in 17 genes from 19 patients, which were predicted to be functional. These mutations were further confirmed by examination of the 103 healthy controls. Among the mutated genes, CRYBB3 had the highest mutation frequency with mutations detected four times in four patients, followed by EPHA2, NHS, and WDR36, the mutation of which were detected two times in two patients. We observed that the four patients with CRYBB3 mutations had three different cataract phenotypes. CONCLUSIONS: From this study, we concluded the clinical and genetic heterogeneity of SCC. This is the first study to report broad spectrum genotyping for patients with SCC. Molecular Vision 2016-06-08 /pmc/articles/PMC4896834/ /pubmed/27307692 Text en Copyright © 2016 Molecular Vision. http://creativecommons.org/licenses/by-nc-nd/3.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited, used for non-commercial purposes, and is not altered or transformed. |
spellingShingle | Research Article Li, Dan Wang, Siying Ye, Hongfei Tang, Yating Qiu, Xiaodi Fan, Qi Rong, Xianfang Liu, Xin Chen, Yuhong Yang, Jin Lu, Yi Distribution of gene mutations in sporadic congenital cataract in a Han Chinese population |
title | Distribution of gene mutations in sporadic congenital cataract in a Han Chinese population |
title_full | Distribution of gene mutations in sporadic congenital cataract in a Han Chinese population |
title_fullStr | Distribution of gene mutations in sporadic congenital cataract in a Han Chinese population |
title_full_unstemmed | Distribution of gene mutations in sporadic congenital cataract in a Han Chinese population |
title_short | Distribution of gene mutations in sporadic congenital cataract in a Han Chinese population |
title_sort | distribution of gene mutations in sporadic congenital cataract in a han chinese population |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4896834/ https://www.ncbi.nlm.nih.gov/pubmed/27307692 |
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