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An Algebraic Derivation of Chao's Estimator of the Number of Species in a Community Highlights the Condition Allowing Chao to Deliver Centered Estimates

Anne Chao proposed a very popular, nonparametric estimator of the species richness of a community, on the basis of a limited size sampling of this community. This expression was originally derived on a statistical basis as a lower-bound estimate of the number of missing species in the sample and pro...

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Autor principal: Béguinot, Jean
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Hindawi Publishing Corporation 2014
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4897167/
https://www.ncbi.nlm.nih.gov/pubmed/27437483
http://dx.doi.org/10.1155/2014/847328
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author Béguinot, Jean
author_facet Béguinot, Jean
author_sort Béguinot, Jean
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description Anne Chao proposed a very popular, nonparametric estimator of the species richness of a community, on the basis of a limited size sampling of this community. This expression was originally derived on a statistical basis as a lower-bound estimate of the number of missing species in the sample and provides accordingly a minimal threshold for the estimation of the total species richness of the community. Hereafter, we propose an alternative, algebraic derivation of Chao's estimator, demonstrating thereby that Chao's formulation may also provide centered estimates (and not only a lower bound threshold), provided that the sampled communities satisfy a specific type of SAD (species abundance distribution). This particular SAD corresponds to the case when the number of unrecorded species in the sample tends to decrease exponentially with increasing sampling size. It turns out that the shape of this “ideal” SAD often conforms approximately to the usually recorded types in nature, such as “log-normal” or “broken-stick.”. Accordingly, this may explain why Chao's formulation is generally recognized as a particularly satisfying nonparametric estimator.
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spelling pubmed-48971672016-07-19 An Algebraic Derivation of Chao's Estimator of the Number of Species in a Community Highlights the Condition Allowing Chao to Deliver Centered Estimates Béguinot, Jean Int Sch Res Notices Research Article Anne Chao proposed a very popular, nonparametric estimator of the species richness of a community, on the basis of a limited size sampling of this community. This expression was originally derived on a statistical basis as a lower-bound estimate of the number of missing species in the sample and provides accordingly a minimal threshold for the estimation of the total species richness of the community. Hereafter, we propose an alternative, algebraic derivation of Chao's estimator, demonstrating thereby that Chao's formulation may also provide centered estimates (and not only a lower bound threshold), provided that the sampled communities satisfy a specific type of SAD (species abundance distribution). This particular SAD corresponds to the case when the number of unrecorded species in the sample tends to decrease exponentially with increasing sampling size. It turns out that the shape of this “ideal” SAD often conforms approximately to the usually recorded types in nature, such as “log-normal” or “broken-stick.”. Accordingly, this may explain why Chao's formulation is generally recognized as a particularly satisfying nonparametric estimator. Hindawi Publishing Corporation 2014-11-11 /pmc/articles/PMC4897167/ /pubmed/27437483 http://dx.doi.org/10.1155/2014/847328 Text en Copyright © 2014 Jean Béguinot. https://creativecommons.org/licenses/by/3.0/ This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Article
Béguinot, Jean
An Algebraic Derivation of Chao's Estimator of the Number of Species in a Community Highlights the Condition Allowing Chao to Deliver Centered Estimates
title An Algebraic Derivation of Chao's Estimator of the Number of Species in a Community Highlights the Condition Allowing Chao to Deliver Centered Estimates
title_full An Algebraic Derivation of Chao's Estimator of the Number of Species in a Community Highlights the Condition Allowing Chao to Deliver Centered Estimates
title_fullStr An Algebraic Derivation of Chao's Estimator of the Number of Species in a Community Highlights the Condition Allowing Chao to Deliver Centered Estimates
title_full_unstemmed An Algebraic Derivation of Chao's Estimator of the Number of Species in a Community Highlights the Condition Allowing Chao to Deliver Centered Estimates
title_short An Algebraic Derivation of Chao's Estimator of the Number of Species in a Community Highlights the Condition Allowing Chao to Deliver Centered Estimates
title_sort algebraic derivation of chao's estimator of the number of species in a community highlights the condition allowing chao to deliver centered estimates
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4897167/
https://www.ncbi.nlm.nih.gov/pubmed/27437483
http://dx.doi.org/10.1155/2014/847328
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