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Computing Average Passive Forces in Sarcomeres in Length-Ramp Simulations

Passive forces in sarcomeres are mainly related to the giant protein titin. Titin’s extensible region consists of spring-like elements acting in series. In skeletal muscles these elements are the PEVK segment, two distinct immunoglobulin (Ig) domain regions (proximal and distal), and a N2A portion....

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Autores principales: Schappacher-Tilp, Gudrun, Leonard, Timothy, Desch, Gertrud, Herzog, Walter
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4898704/
https://www.ncbi.nlm.nih.gov/pubmed/27276390
http://dx.doi.org/10.1371/journal.pcbi.1004904
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author Schappacher-Tilp, Gudrun
Leonard, Timothy
Desch, Gertrud
Herzog, Walter
author_facet Schappacher-Tilp, Gudrun
Leonard, Timothy
Desch, Gertrud
Herzog, Walter
author_sort Schappacher-Tilp, Gudrun
collection PubMed
description Passive forces in sarcomeres are mainly related to the giant protein titin. Titin’s extensible region consists of spring-like elements acting in series. In skeletal muscles these elements are the PEVK segment, two distinct immunoglobulin (Ig) domain regions (proximal and distal), and a N2A portion. While distal Ig domains are thought to form inextensible end filaments in intact sarcomeres, proximal Ig domains unfold in a force- and time-dependent manner. In length-ramp experiments of single titin strands, sequential unfolding of Ig domains leads to a typical saw-tooth pattern in force-elongation curves which can be simulated by Monte Carlo simulations. In sarcomeres, where more than a thousand titin strands are arranged in parallel, numerous Monte Carlo simulations are required to estimate the resultant force of all titin filaments based on the non-uniform titin elongations. To simplify calculations, the stochastic model of passive forces is often replaced by linear or non-linear deterministic and phenomenological functions. However, new theories of muscle contraction are based on the hypothesized binding of titin to the actin filament upon activation, and thereby on a prominent role of the structural properties of titin. Therefore, these theories necessitate a detailed analysis of titin forces in length-ramp experiments. In our study we present a simple and efficient alternative to Monte Carlo simulations. Based on a structural titin model, we calculate the exact probability distributions of unfolded Ig domains under length-ramp conditions needed for rigorous analysis of expected forces, distribution of unfolding forces, etc. Due to the generality of our model, the approach is applicable to a wide range of stochastic protein unfolding problems.
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spelling pubmed-48987042016-06-16 Computing Average Passive Forces in Sarcomeres in Length-Ramp Simulations Schappacher-Tilp, Gudrun Leonard, Timothy Desch, Gertrud Herzog, Walter PLoS Comput Biol Research Article Passive forces in sarcomeres are mainly related to the giant protein titin. Titin’s extensible region consists of spring-like elements acting in series. In skeletal muscles these elements are the PEVK segment, two distinct immunoglobulin (Ig) domain regions (proximal and distal), and a N2A portion. While distal Ig domains are thought to form inextensible end filaments in intact sarcomeres, proximal Ig domains unfold in a force- and time-dependent manner. In length-ramp experiments of single titin strands, sequential unfolding of Ig domains leads to a typical saw-tooth pattern in force-elongation curves which can be simulated by Monte Carlo simulations. In sarcomeres, where more than a thousand titin strands are arranged in parallel, numerous Monte Carlo simulations are required to estimate the resultant force of all titin filaments based on the non-uniform titin elongations. To simplify calculations, the stochastic model of passive forces is often replaced by linear or non-linear deterministic and phenomenological functions. However, new theories of muscle contraction are based on the hypothesized binding of titin to the actin filament upon activation, and thereby on a prominent role of the structural properties of titin. Therefore, these theories necessitate a detailed analysis of titin forces in length-ramp experiments. In our study we present a simple and efficient alternative to Monte Carlo simulations. Based on a structural titin model, we calculate the exact probability distributions of unfolded Ig domains under length-ramp conditions needed for rigorous analysis of expected forces, distribution of unfolding forces, etc. Due to the generality of our model, the approach is applicable to a wide range of stochastic protein unfolding problems. Public Library of Science 2016-06-08 /pmc/articles/PMC4898704/ /pubmed/27276390 http://dx.doi.org/10.1371/journal.pcbi.1004904 Text en © 2016 Schappacher-Tilp et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Schappacher-Tilp, Gudrun
Leonard, Timothy
Desch, Gertrud
Herzog, Walter
Computing Average Passive Forces in Sarcomeres in Length-Ramp Simulations
title Computing Average Passive Forces in Sarcomeres in Length-Ramp Simulations
title_full Computing Average Passive Forces in Sarcomeres in Length-Ramp Simulations
title_fullStr Computing Average Passive Forces in Sarcomeres in Length-Ramp Simulations
title_full_unstemmed Computing Average Passive Forces in Sarcomeres in Length-Ramp Simulations
title_short Computing Average Passive Forces in Sarcomeres in Length-Ramp Simulations
title_sort computing average passive forces in sarcomeres in length-ramp simulations
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4898704/
https://www.ncbi.nlm.nih.gov/pubmed/27276390
http://dx.doi.org/10.1371/journal.pcbi.1004904
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