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DREMECELS: A Curated Database for Base Excision and Mismatch Repair Mechanisms Associated Human Malignancies
DNA repair mechanisms act as a warrior combating various damaging processes that ensue critical malignancies. DREMECELS was designed considering the malignancies with frequent alterations in DNA repair pathways, that is, colorectal and endometrial cancers, associated with Lynch syndrome (also known...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2016
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4898741/ https://www.ncbi.nlm.nih.gov/pubmed/27276067 http://dx.doi.org/10.1371/journal.pone.0157031 |
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author | Shukla, Ankita Moussa, Ahmed Singh, Tiratha Raj |
author_facet | Shukla, Ankita Moussa, Ahmed Singh, Tiratha Raj |
author_sort | Shukla, Ankita |
collection | PubMed |
description | DNA repair mechanisms act as a warrior combating various damaging processes that ensue critical malignancies. DREMECELS was designed considering the malignancies with frequent alterations in DNA repair pathways, that is, colorectal and endometrial cancers, associated with Lynch syndrome (also known as HNPCC). Since lynch syndrome carries high risk (~40–60%) for both cancers, therefore we decided to cover all three diseases in this portal. Although a large population is presently affected by these malignancies, many resources are available for various cancer types but no database archives information on the genes specifically for only these cancers and disorders. The database contains 156 genes and two repair mechanisms, base excision repair (BER) and mismatch repair (MMR). Other parameters include some of the regulatory processes that have roles in these disease progressions due to incompetent repair mechanisms, specifically BER and MMR. However, our unique database mainly provides qualitative and quantitative information on these cancer types along with methylation, drug sensitivity, miRNAs, copy number variation (CNV) and somatic mutations data. This database would serve the scientific community by providing integrated information on these disease types, thus sustaining diagnostic and therapeutic processes. This repository would serve as an excellent accompaniment for researchers and biomedical professionals and facilitate in understanding such critical diseases. DREMECELS is publicly available at http://www.bioinfoindia.org/dremecels. |
format | Online Article Text |
id | pubmed-4898741 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-48987412016-06-16 DREMECELS: A Curated Database for Base Excision and Mismatch Repair Mechanisms Associated Human Malignancies Shukla, Ankita Moussa, Ahmed Singh, Tiratha Raj PLoS One Research Article DNA repair mechanisms act as a warrior combating various damaging processes that ensue critical malignancies. DREMECELS was designed considering the malignancies with frequent alterations in DNA repair pathways, that is, colorectal and endometrial cancers, associated with Lynch syndrome (also known as HNPCC). Since lynch syndrome carries high risk (~40–60%) for both cancers, therefore we decided to cover all three diseases in this portal. Although a large population is presently affected by these malignancies, many resources are available for various cancer types but no database archives information on the genes specifically for only these cancers and disorders. The database contains 156 genes and two repair mechanisms, base excision repair (BER) and mismatch repair (MMR). Other parameters include some of the regulatory processes that have roles in these disease progressions due to incompetent repair mechanisms, specifically BER and MMR. However, our unique database mainly provides qualitative and quantitative information on these cancer types along with methylation, drug sensitivity, miRNAs, copy number variation (CNV) and somatic mutations data. This database would serve the scientific community by providing integrated information on these disease types, thus sustaining diagnostic and therapeutic processes. This repository would serve as an excellent accompaniment for researchers and biomedical professionals and facilitate in understanding such critical diseases. DREMECELS is publicly available at http://www.bioinfoindia.org/dremecels. Public Library of Science 2016-06-08 /pmc/articles/PMC4898741/ /pubmed/27276067 http://dx.doi.org/10.1371/journal.pone.0157031 Text en © 2016 Shukla et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Article Shukla, Ankita Moussa, Ahmed Singh, Tiratha Raj DREMECELS: A Curated Database for Base Excision and Mismatch Repair Mechanisms Associated Human Malignancies |
title | DREMECELS: A Curated Database for Base Excision and Mismatch Repair Mechanisms Associated Human Malignancies |
title_full | DREMECELS: A Curated Database for Base Excision and Mismatch Repair Mechanisms Associated Human Malignancies |
title_fullStr | DREMECELS: A Curated Database for Base Excision and Mismatch Repair Mechanisms Associated Human Malignancies |
title_full_unstemmed | DREMECELS: A Curated Database for Base Excision and Mismatch Repair Mechanisms Associated Human Malignancies |
title_short | DREMECELS: A Curated Database for Base Excision and Mismatch Repair Mechanisms Associated Human Malignancies |
title_sort | dremecels: a curated database for base excision and mismatch repair mechanisms associated human malignancies |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4898741/ https://www.ncbi.nlm.nih.gov/pubmed/27276067 http://dx.doi.org/10.1371/journal.pone.0157031 |
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