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DREMECELS: A Curated Database for Base Excision and Mismatch Repair Mechanisms Associated Human Malignancies

DNA repair mechanisms act as a warrior combating various damaging processes that ensue critical malignancies. DREMECELS was designed considering the malignancies with frequent alterations in DNA repair pathways, that is, colorectal and endometrial cancers, associated with Lynch syndrome (also known...

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Detalles Bibliográficos
Autores principales: Shukla, Ankita, Moussa, Ahmed, Singh, Tiratha Raj
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4898741/
https://www.ncbi.nlm.nih.gov/pubmed/27276067
http://dx.doi.org/10.1371/journal.pone.0157031
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author Shukla, Ankita
Moussa, Ahmed
Singh, Tiratha Raj
author_facet Shukla, Ankita
Moussa, Ahmed
Singh, Tiratha Raj
author_sort Shukla, Ankita
collection PubMed
description DNA repair mechanisms act as a warrior combating various damaging processes that ensue critical malignancies. DREMECELS was designed considering the malignancies with frequent alterations in DNA repair pathways, that is, colorectal and endometrial cancers, associated with Lynch syndrome (also known as HNPCC). Since lynch syndrome carries high risk (~40–60%) for both cancers, therefore we decided to cover all three diseases in this portal. Although a large population is presently affected by these malignancies, many resources are available for various cancer types but no database archives information on the genes specifically for only these cancers and disorders. The database contains 156 genes and two repair mechanisms, base excision repair (BER) and mismatch repair (MMR). Other parameters include some of the regulatory processes that have roles in these disease progressions due to incompetent repair mechanisms, specifically BER and MMR. However, our unique database mainly provides qualitative and quantitative information on these cancer types along with methylation, drug sensitivity, miRNAs, copy number variation (CNV) and somatic mutations data. This database would serve the scientific community by providing integrated information on these disease types, thus sustaining diagnostic and therapeutic processes. This repository would serve as an excellent accompaniment for researchers and biomedical professionals and facilitate in understanding such critical diseases. DREMECELS is publicly available at http://www.bioinfoindia.org/dremecels.
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spelling pubmed-48987412016-06-16 DREMECELS: A Curated Database for Base Excision and Mismatch Repair Mechanisms Associated Human Malignancies Shukla, Ankita Moussa, Ahmed Singh, Tiratha Raj PLoS One Research Article DNA repair mechanisms act as a warrior combating various damaging processes that ensue critical malignancies. DREMECELS was designed considering the malignancies with frequent alterations in DNA repair pathways, that is, colorectal and endometrial cancers, associated with Lynch syndrome (also known as HNPCC). Since lynch syndrome carries high risk (~40–60%) for both cancers, therefore we decided to cover all three diseases in this portal. Although a large population is presently affected by these malignancies, many resources are available for various cancer types but no database archives information on the genes specifically for only these cancers and disorders. The database contains 156 genes and two repair mechanisms, base excision repair (BER) and mismatch repair (MMR). Other parameters include some of the regulatory processes that have roles in these disease progressions due to incompetent repair mechanisms, specifically BER and MMR. However, our unique database mainly provides qualitative and quantitative information on these cancer types along with methylation, drug sensitivity, miRNAs, copy number variation (CNV) and somatic mutations data. This database would serve the scientific community by providing integrated information on these disease types, thus sustaining diagnostic and therapeutic processes. This repository would serve as an excellent accompaniment for researchers and biomedical professionals and facilitate in understanding such critical diseases. DREMECELS is publicly available at http://www.bioinfoindia.org/dremecels. Public Library of Science 2016-06-08 /pmc/articles/PMC4898741/ /pubmed/27276067 http://dx.doi.org/10.1371/journal.pone.0157031 Text en © 2016 Shukla et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Shukla, Ankita
Moussa, Ahmed
Singh, Tiratha Raj
DREMECELS: A Curated Database for Base Excision and Mismatch Repair Mechanisms Associated Human Malignancies
title DREMECELS: A Curated Database for Base Excision and Mismatch Repair Mechanisms Associated Human Malignancies
title_full DREMECELS: A Curated Database for Base Excision and Mismatch Repair Mechanisms Associated Human Malignancies
title_fullStr DREMECELS: A Curated Database for Base Excision and Mismatch Repair Mechanisms Associated Human Malignancies
title_full_unstemmed DREMECELS: A Curated Database for Base Excision and Mismatch Repair Mechanisms Associated Human Malignancies
title_short DREMECELS: A Curated Database for Base Excision and Mismatch Repair Mechanisms Associated Human Malignancies
title_sort dremecels: a curated database for base excision and mismatch repair mechanisms associated human malignancies
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4898741/
https://www.ncbi.nlm.nih.gov/pubmed/27276067
http://dx.doi.org/10.1371/journal.pone.0157031
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