Cargando…

Comprehensive Circular RNA Profiling Reveals That hsa_circ_0005075, a New Circular RNA Biomarker, Is Involved in Hepatocellular Crcinoma Development

There is increasing evidence that circular RNAs (circRNAs) are involved in cancer development; however, their role in hepatocellular carcinoma (HCC) remains unclear. Here, we aimed to determine the circRNA expression profile in HCC, and investigate relevant mechanisms for cancer progression. The glo...

Descripción completa

Detalles Bibliográficos
Autores principales: Shang, Xingchen, Li, Guanzhen, Liu, Hui, Li, Tao, Liu, Juan, Zhao, Qi, Wang, Chuanxi
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Wolters Kluwer Health 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4900729/
https://www.ncbi.nlm.nih.gov/pubmed/27258521
http://dx.doi.org/10.1097/MD.0000000000003811
_version_ 1782436694088220672
author Shang, Xingchen
Li, Guanzhen
Liu, Hui
Li, Tao
Liu, Juan
Zhao, Qi
Wang, Chuanxi
author_facet Shang, Xingchen
Li, Guanzhen
Liu, Hui
Li, Tao
Liu, Juan
Zhao, Qi
Wang, Chuanxi
author_sort Shang, Xingchen
collection PubMed
description There is increasing evidence that circular RNAs (circRNAs) are involved in cancer development; however, their role in hepatocellular carcinoma (HCC) remains unclear. Here, we aimed to determine the circRNA expression profile in HCC, and investigate relevant mechanisms for cancer progression. The global circRNA expression profile between HCC (n = 3) and adjacent normal liver (n = 3) tissue was significantly different. Three circRNAs (hsa_circ_0000520, hsa_circ_0005075, and hsa_circ_0066444) showed significantly different expression levels in HCC tissues, which were further validated in 60 matched tissue samples using real-time qRT-PCR. Only hsa_circ_0005075 exhibited significant difference in expression (P <0.001) between HCC and normal tissues. Hsa_circ_0005075 expression correlated with HCC tumor size (P = 0.042), and showed good diagnostic potential (AUROC = 0.94). Finally, we constructed a network of hsa_circ_0005075-targeted miRNA–gene interactions, including miR-23b-5p, miR-93-3p, miR-581, miR-23a-5p, and their corresponding mRNAs. Gene oncology analysis revealed that hsa_circ_0005075 could participate in cell adhesion during HCC development. In summary, we identified hsa_circ_0005075 as a potential HCC biomarker; however, further studies are required to confirm the role of this circRNA, and others, in HCC development.
format Online
Article
Text
id pubmed-4900729
institution National Center for Biotechnology Information
language English
publishDate 2016
publisher Wolters Kluwer Health
record_format MEDLINE/PubMed
spelling pubmed-49007292016-06-22 Comprehensive Circular RNA Profiling Reveals That hsa_circ_0005075, a New Circular RNA Biomarker, Is Involved in Hepatocellular Crcinoma Development Shang, Xingchen Li, Guanzhen Liu, Hui Li, Tao Liu, Juan Zhao, Qi Wang, Chuanxi Medicine (Baltimore) 5700 There is increasing evidence that circular RNAs (circRNAs) are involved in cancer development; however, their role in hepatocellular carcinoma (HCC) remains unclear. Here, we aimed to determine the circRNA expression profile in HCC, and investigate relevant mechanisms for cancer progression. The global circRNA expression profile between HCC (n = 3) and adjacent normal liver (n = 3) tissue was significantly different. Three circRNAs (hsa_circ_0000520, hsa_circ_0005075, and hsa_circ_0066444) showed significantly different expression levels in HCC tissues, which were further validated in 60 matched tissue samples using real-time qRT-PCR. Only hsa_circ_0005075 exhibited significant difference in expression (P <0.001) between HCC and normal tissues. Hsa_circ_0005075 expression correlated with HCC tumor size (P = 0.042), and showed good diagnostic potential (AUROC = 0.94). Finally, we constructed a network of hsa_circ_0005075-targeted miRNA–gene interactions, including miR-23b-5p, miR-93-3p, miR-581, miR-23a-5p, and their corresponding mRNAs. Gene oncology analysis revealed that hsa_circ_0005075 could participate in cell adhesion during HCC development. In summary, we identified hsa_circ_0005075 as a potential HCC biomarker; however, further studies are required to confirm the role of this circRNA, and others, in HCC development. Wolters Kluwer Health 2016-06-03 /pmc/articles/PMC4900729/ /pubmed/27258521 http://dx.doi.org/10.1097/MD.0000000000003811 Text en Copyright © 2016 Wolters Kluwer Health, Inc. All rights reserved. http://creativecommons.org/licenses/by-nc-nd/4.0 This is an open access article distributed under the Creative Commons Attribution-NonCommercial-NoDerivatives License 4.0, where it is permissible to download, share and reproduce the work in any medium, provided it is properly cited. The work cannot be changed in any way or used commercially. http://creativecommons.org/licenses/by-nc-nd/4.0
spellingShingle 5700
Shang, Xingchen
Li, Guanzhen
Liu, Hui
Li, Tao
Liu, Juan
Zhao, Qi
Wang, Chuanxi
Comprehensive Circular RNA Profiling Reveals That hsa_circ_0005075, a New Circular RNA Biomarker, Is Involved in Hepatocellular Crcinoma Development
title Comprehensive Circular RNA Profiling Reveals That hsa_circ_0005075, a New Circular RNA Biomarker, Is Involved in Hepatocellular Crcinoma Development
title_full Comprehensive Circular RNA Profiling Reveals That hsa_circ_0005075, a New Circular RNA Biomarker, Is Involved in Hepatocellular Crcinoma Development
title_fullStr Comprehensive Circular RNA Profiling Reveals That hsa_circ_0005075, a New Circular RNA Biomarker, Is Involved in Hepatocellular Crcinoma Development
title_full_unstemmed Comprehensive Circular RNA Profiling Reveals That hsa_circ_0005075, a New Circular RNA Biomarker, Is Involved in Hepatocellular Crcinoma Development
title_short Comprehensive Circular RNA Profiling Reveals That hsa_circ_0005075, a New Circular RNA Biomarker, Is Involved in Hepatocellular Crcinoma Development
title_sort comprehensive circular rna profiling reveals that hsa_circ_0005075, a new circular rna biomarker, is involved in hepatocellular crcinoma development
topic 5700
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4900729/
https://www.ncbi.nlm.nih.gov/pubmed/27258521
http://dx.doi.org/10.1097/MD.0000000000003811
work_keys_str_mv AT shangxingchen comprehensivecircularrnaprofilingrevealsthathsacirc0005075anewcircularrnabiomarkerisinvolvedinhepatocellularcrcinomadevelopment
AT liguanzhen comprehensivecircularrnaprofilingrevealsthathsacirc0005075anewcircularrnabiomarkerisinvolvedinhepatocellularcrcinomadevelopment
AT liuhui comprehensivecircularrnaprofilingrevealsthathsacirc0005075anewcircularrnabiomarkerisinvolvedinhepatocellularcrcinomadevelopment
AT litao comprehensivecircularrnaprofilingrevealsthathsacirc0005075anewcircularrnabiomarkerisinvolvedinhepatocellularcrcinomadevelopment
AT liujuan comprehensivecircularrnaprofilingrevealsthathsacirc0005075anewcircularrnabiomarkerisinvolvedinhepatocellularcrcinomadevelopment
AT zhaoqi comprehensivecircularrnaprofilingrevealsthathsacirc0005075anewcircularrnabiomarkerisinvolvedinhepatocellularcrcinomadevelopment
AT wangchuanxi comprehensivecircularrnaprofilingrevealsthathsacirc0005075anewcircularrnabiomarkerisinvolvedinhepatocellularcrcinomadevelopment