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cis–trans-Amide isomerism of the 3,4-dehydroproline residue, the ‘unpuckered’ proline

Proline (Pro) is an outstanding amino acid in various biochemical and physicochemical perspectives, especially when considering the cis–trans isomerism of the peptidyl-Pro amide bond. Elucidation of the roles of Pro in chemical or biological systems and engineering of its features can be addressed w...

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Autores principales: Kubyshkin, Vladimir, Budisa, Nediljko
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Beilstein-Institut 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4901939/
https://www.ncbi.nlm.nih.gov/pubmed/27340450
http://dx.doi.org/10.3762/bjoc.12.57
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author Kubyshkin, Vladimir
Budisa, Nediljko
author_facet Kubyshkin, Vladimir
Budisa, Nediljko
author_sort Kubyshkin, Vladimir
collection PubMed
description Proline (Pro) is an outstanding amino acid in various biochemical and physicochemical perspectives, especially when considering the cis–trans isomerism of the peptidyl-Pro amide bond. Elucidation of the roles of Pro in chemical or biological systems and engineering of its features can be addressed with various Pro analogues. Here we report an experimental work investigating the basic physicochemical properties of two Pro analogues which possess a 3,4-double bond: 3,4-dehydroproline and 4-trifluoromethyl-3,4-dehydroproline. Both indicate a flat pyrroline ring in their crystal structures, in agreement with previous theoretical calculations. In solution, the peptide mimics exhibit an almost unchanged equilibrium of the trans/cis ratios compared to that of Pro and 4-trifluoromethylproline derivatives. Finally we demonstrate that the 3,4-double bond in the investigated structures leads to an increase of the amide rotational barriers, presumably due to an interplay with the transition state.
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spelling pubmed-49019392016-06-23 cis–trans-Amide isomerism of the 3,4-dehydroproline residue, the ‘unpuckered’ proline Kubyshkin, Vladimir Budisa, Nediljko Beilstein J Org Chem Full Research Paper Proline (Pro) is an outstanding amino acid in various biochemical and physicochemical perspectives, especially when considering the cis–trans isomerism of the peptidyl-Pro amide bond. Elucidation of the roles of Pro in chemical or biological systems and engineering of its features can be addressed with various Pro analogues. Here we report an experimental work investigating the basic physicochemical properties of two Pro analogues which possess a 3,4-double bond: 3,4-dehydroproline and 4-trifluoromethyl-3,4-dehydroproline. Both indicate a flat pyrroline ring in their crystal structures, in agreement with previous theoretical calculations. In solution, the peptide mimics exhibit an almost unchanged equilibrium of the trans/cis ratios compared to that of Pro and 4-trifluoromethylproline derivatives. Finally we demonstrate that the 3,4-double bond in the investigated structures leads to an increase of the amide rotational barriers, presumably due to an interplay with the transition state. Beilstein-Institut 2016-03-29 /pmc/articles/PMC4901939/ /pubmed/27340450 http://dx.doi.org/10.3762/bjoc.12.57 Text en Copyright © 2016, Kubyshkin and Budisa https://creativecommons.org/licenses/by/2.0https://www.beilstein-journals.org/bjoc/termsThis is an Open Access article under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. The license is subject to the Beilstein Journal of Organic Chemistry terms and conditions: (https://www.beilstein-journals.org/bjoc/terms)
spellingShingle Full Research Paper
Kubyshkin, Vladimir
Budisa, Nediljko
cis–trans-Amide isomerism of the 3,4-dehydroproline residue, the ‘unpuckered’ proline
title cis–trans-Amide isomerism of the 3,4-dehydroproline residue, the ‘unpuckered’ proline
title_full cis–trans-Amide isomerism of the 3,4-dehydroproline residue, the ‘unpuckered’ proline
title_fullStr cis–trans-Amide isomerism of the 3,4-dehydroproline residue, the ‘unpuckered’ proline
title_full_unstemmed cis–trans-Amide isomerism of the 3,4-dehydroproline residue, the ‘unpuckered’ proline
title_short cis–trans-Amide isomerism of the 3,4-dehydroproline residue, the ‘unpuckered’ proline
title_sort cis–trans-amide isomerism of the 3,4-dehydroproline residue, the ‘unpuckered’ proline
topic Full Research Paper
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4901939/
https://www.ncbi.nlm.nih.gov/pubmed/27340450
http://dx.doi.org/10.3762/bjoc.12.57
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