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cis–trans-Amide isomerism of the 3,4-dehydroproline residue, the ‘unpuckered’ proline
Proline (Pro) is an outstanding amino acid in various biochemical and physicochemical perspectives, especially when considering the cis–trans isomerism of the peptidyl-Pro amide bond. Elucidation of the roles of Pro in chemical or biological systems and engineering of its features can be addressed w...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Beilstein-Institut
2016
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4901939/ https://www.ncbi.nlm.nih.gov/pubmed/27340450 http://dx.doi.org/10.3762/bjoc.12.57 |
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author | Kubyshkin, Vladimir Budisa, Nediljko |
author_facet | Kubyshkin, Vladimir Budisa, Nediljko |
author_sort | Kubyshkin, Vladimir |
collection | PubMed |
description | Proline (Pro) is an outstanding amino acid in various biochemical and physicochemical perspectives, especially when considering the cis–trans isomerism of the peptidyl-Pro amide bond. Elucidation of the roles of Pro in chemical or biological systems and engineering of its features can be addressed with various Pro analogues. Here we report an experimental work investigating the basic physicochemical properties of two Pro analogues which possess a 3,4-double bond: 3,4-dehydroproline and 4-trifluoromethyl-3,4-dehydroproline. Both indicate a flat pyrroline ring in their crystal structures, in agreement with previous theoretical calculations. In solution, the peptide mimics exhibit an almost unchanged equilibrium of the trans/cis ratios compared to that of Pro and 4-trifluoromethylproline derivatives. Finally we demonstrate that the 3,4-double bond in the investigated structures leads to an increase of the amide rotational barriers, presumably due to an interplay with the transition state. |
format | Online Article Text |
id | pubmed-4901939 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | Beilstein-Institut |
record_format | MEDLINE/PubMed |
spelling | pubmed-49019392016-06-23 cis–trans-Amide isomerism of the 3,4-dehydroproline residue, the ‘unpuckered’ proline Kubyshkin, Vladimir Budisa, Nediljko Beilstein J Org Chem Full Research Paper Proline (Pro) is an outstanding amino acid in various biochemical and physicochemical perspectives, especially when considering the cis–trans isomerism of the peptidyl-Pro amide bond. Elucidation of the roles of Pro in chemical or biological systems and engineering of its features can be addressed with various Pro analogues. Here we report an experimental work investigating the basic physicochemical properties of two Pro analogues which possess a 3,4-double bond: 3,4-dehydroproline and 4-trifluoromethyl-3,4-dehydroproline. Both indicate a flat pyrroline ring in their crystal structures, in agreement with previous theoretical calculations. In solution, the peptide mimics exhibit an almost unchanged equilibrium of the trans/cis ratios compared to that of Pro and 4-trifluoromethylproline derivatives. Finally we demonstrate that the 3,4-double bond in the investigated structures leads to an increase of the amide rotational barriers, presumably due to an interplay with the transition state. Beilstein-Institut 2016-03-29 /pmc/articles/PMC4901939/ /pubmed/27340450 http://dx.doi.org/10.3762/bjoc.12.57 Text en Copyright © 2016, Kubyshkin and Budisa https://creativecommons.org/licenses/by/2.0https://www.beilstein-journals.org/bjoc/termsThis is an Open Access article under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. The license is subject to the Beilstein Journal of Organic Chemistry terms and conditions: (https://www.beilstein-journals.org/bjoc/terms) |
spellingShingle | Full Research Paper Kubyshkin, Vladimir Budisa, Nediljko cis–trans-Amide isomerism of the 3,4-dehydroproline residue, the ‘unpuckered’ proline |
title | cis–trans-Amide isomerism of the 3,4-dehydroproline residue, the ‘unpuckered’ proline |
title_full | cis–trans-Amide isomerism of the 3,4-dehydroproline residue, the ‘unpuckered’ proline |
title_fullStr | cis–trans-Amide isomerism of the 3,4-dehydroproline residue, the ‘unpuckered’ proline |
title_full_unstemmed | cis–trans-Amide isomerism of the 3,4-dehydroproline residue, the ‘unpuckered’ proline |
title_short | cis–trans-Amide isomerism of the 3,4-dehydroproline residue, the ‘unpuckered’ proline |
title_sort | cis–trans-amide isomerism of the 3,4-dehydroproline residue, the ‘unpuckered’ proline |
topic | Full Research Paper |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4901939/ https://www.ncbi.nlm.nih.gov/pubmed/27340450 http://dx.doi.org/10.3762/bjoc.12.57 |
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