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Computational Visual Stress Level Analysis of Calcareous Algae Exposed to Sedimentation

This paper presents a machine learning based approach for analyses of photos collected from laboratory experiments conducted to assess the potential impact of water-based drill cuttings on deep-water rhodolith-forming calcareous algae. This pilot study uses imaging technology to quantify and monitor...

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Autores principales: Osterloff, Jonas, Nilssen, Ingunn, Eide, Ingvar, de Oliveira Figueiredo, Marcia Abreu, de Souza Tâmega, Frederico Tapajós, Nattkemper, Tim W.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4902238/
https://www.ncbi.nlm.nih.gov/pubmed/27285611
http://dx.doi.org/10.1371/journal.pone.0157329
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author Osterloff, Jonas
Nilssen, Ingunn
Eide, Ingvar
de Oliveira Figueiredo, Marcia Abreu
de Souza Tâmega, Frederico Tapajós
Nattkemper, Tim W.
author_facet Osterloff, Jonas
Nilssen, Ingunn
Eide, Ingvar
de Oliveira Figueiredo, Marcia Abreu
de Souza Tâmega, Frederico Tapajós
Nattkemper, Tim W.
author_sort Osterloff, Jonas
collection PubMed
description This paper presents a machine learning based approach for analyses of photos collected from laboratory experiments conducted to assess the potential impact of water-based drill cuttings on deep-water rhodolith-forming calcareous algae. This pilot study uses imaging technology to quantify and monitor the stress levels of the calcareous algae Mesophyllum engelhartii (Foslie) Adey caused by various degrees of light exposure, flow intensity and amount of sediment. A machine learning based algorithm was applied to assess the temporal variation of the calcareous algae size (∼ mass) and color automatically. Measured size and color were correlated to the photosynthetic efficiency (maximum quantum yield of charge separation in photosystem II, [Image: see text] ) and degree of sediment coverage using multivariate regression. The multivariate regression showed correlations between time and calcareous algae sizes, as well as correlations between fluorescence and calcareous algae colors.
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spelling pubmed-49022382016-06-24 Computational Visual Stress Level Analysis of Calcareous Algae Exposed to Sedimentation Osterloff, Jonas Nilssen, Ingunn Eide, Ingvar de Oliveira Figueiredo, Marcia Abreu de Souza Tâmega, Frederico Tapajós Nattkemper, Tim W. PLoS One Research Article This paper presents a machine learning based approach for analyses of photos collected from laboratory experiments conducted to assess the potential impact of water-based drill cuttings on deep-water rhodolith-forming calcareous algae. This pilot study uses imaging technology to quantify and monitor the stress levels of the calcareous algae Mesophyllum engelhartii (Foslie) Adey caused by various degrees of light exposure, flow intensity and amount of sediment. A machine learning based algorithm was applied to assess the temporal variation of the calcareous algae size (∼ mass) and color automatically. Measured size and color were correlated to the photosynthetic efficiency (maximum quantum yield of charge separation in photosystem II, [Image: see text] ) and degree of sediment coverage using multivariate regression. The multivariate regression showed correlations between time and calcareous algae sizes, as well as correlations between fluorescence and calcareous algae colors. Public Library of Science 2016-06-10 /pmc/articles/PMC4902238/ /pubmed/27285611 http://dx.doi.org/10.1371/journal.pone.0157329 Text en © 2016 Osterloff et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Osterloff, Jonas
Nilssen, Ingunn
Eide, Ingvar
de Oliveira Figueiredo, Marcia Abreu
de Souza Tâmega, Frederico Tapajós
Nattkemper, Tim W.
Computational Visual Stress Level Analysis of Calcareous Algae Exposed to Sedimentation
title Computational Visual Stress Level Analysis of Calcareous Algae Exposed to Sedimentation
title_full Computational Visual Stress Level Analysis of Calcareous Algae Exposed to Sedimentation
title_fullStr Computational Visual Stress Level Analysis of Calcareous Algae Exposed to Sedimentation
title_full_unstemmed Computational Visual Stress Level Analysis of Calcareous Algae Exposed to Sedimentation
title_short Computational Visual Stress Level Analysis of Calcareous Algae Exposed to Sedimentation
title_sort computational visual stress level analysis of calcareous algae exposed to sedimentation
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4902238/
https://www.ncbi.nlm.nih.gov/pubmed/27285611
http://dx.doi.org/10.1371/journal.pone.0157329
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