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Large Scale Chromosome Folding Is Stable against Local Changes in Chromatin Structure

Characterizing the link between small-scale chromatin structure and large-scale chromosome folding during interphase is a prerequisite for understanding transcription. Yet, this link remains poorly investigated. Here, we introduce a simple biophysical model where interphase chromosomes are described...

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Detalles Bibliográficos
Autores principales: Florescu, Ana-Maria, Therizols, Pierre, Rosa, Angelo
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4905689/
https://www.ncbi.nlm.nih.gov/pubmed/27295501
http://dx.doi.org/10.1371/journal.pcbi.1004987
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author Florescu, Ana-Maria
Therizols, Pierre
Rosa, Angelo
author_facet Florescu, Ana-Maria
Therizols, Pierre
Rosa, Angelo
author_sort Florescu, Ana-Maria
collection PubMed
description Characterizing the link between small-scale chromatin structure and large-scale chromosome folding during interphase is a prerequisite for understanding transcription. Yet, this link remains poorly investigated. Here, we introduce a simple biophysical model where interphase chromosomes are described in terms of the folding of chromatin sequences composed of alternating blocks of fibers with different thicknesses and flexibilities, and we use it to study the influence of sequence disorder on chromosome behaviors in space and time. By employing extensive computer simulations, we thus demonstrate that chromosomes undergo noticeable conformational changes only on length-scales smaller than 10(5) basepairs and time-scales shorter than a few seconds, and we suggest there might exist effective upper bounds to the detection of chromosome reorganization in eukaryotes. We prove the relevance of our framework by modeling recent experimental FISH data on murine chromosomes.
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spelling pubmed-49056892016-06-28 Large Scale Chromosome Folding Is Stable against Local Changes in Chromatin Structure Florescu, Ana-Maria Therizols, Pierre Rosa, Angelo PLoS Comput Biol Research Article Characterizing the link between small-scale chromatin structure and large-scale chromosome folding during interphase is a prerequisite for understanding transcription. Yet, this link remains poorly investigated. Here, we introduce a simple biophysical model where interphase chromosomes are described in terms of the folding of chromatin sequences composed of alternating blocks of fibers with different thicknesses and flexibilities, and we use it to study the influence of sequence disorder on chromosome behaviors in space and time. By employing extensive computer simulations, we thus demonstrate that chromosomes undergo noticeable conformational changes only on length-scales smaller than 10(5) basepairs and time-scales shorter than a few seconds, and we suggest there might exist effective upper bounds to the detection of chromosome reorganization in eukaryotes. We prove the relevance of our framework by modeling recent experimental FISH data on murine chromosomes. Public Library of Science 2016-06-13 /pmc/articles/PMC4905689/ /pubmed/27295501 http://dx.doi.org/10.1371/journal.pcbi.1004987 Text en © 2016 Florescu et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Florescu, Ana-Maria
Therizols, Pierre
Rosa, Angelo
Large Scale Chromosome Folding Is Stable against Local Changes in Chromatin Structure
title Large Scale Chromosome Folding Is Stable against Local Changes in Chromatin Structure
title_full Large Scale Chromosome Folding Is Stable against Local Changes in Chromatin Structure
title_fullStr Large Scale Chromosome Folding Is Stable against Local Changes in Chromatin Structure
title_full_unstemmed Large Scale Chromosome Folding Is Stable against Local Changes in Chromatin Structure
title_short Large Scale Chromosome Folding Is Stable against Local Changes in Chromatin Structure
title_sort large scale chromosome folding is stable against local changes in chromatin structure
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4905689/
https://www.ncbi.nlm.nih.gov/pubmed/27295501
http://dx.doi.org/10.1371/journal.pcbi.1004987
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