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Large Scale Chromosome Folding Is Stable against Local Changes in Chromatin Structure
Characterizing the link between small-scale chromatin structure and large-scale chromosome folding during interphase is a prerequisite for understanding transcription. Yet, this link remains poorly investigated. Here, we introduce a simple biophysical model where interphase chromosomes are described...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2016
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4905689/ https://www.ncbi.nlm.nih.gov/pubmed/27295501 http://dx.doi.org/10.1371/journal.pcbi.1004987 |
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author | Florescu, Ana-Maria Therizols, Pierre Rosa, Angelo |
author_facet | Florescu, Ana-Maria Therizols, Pierre Rosa, Angelo |
author_sort | Florescu, Ana-Maria |
collection | PubMed |
description | Characterizing the link between small-scale chromatin structure and large-scale chromosome folding during interphase is a prerequisite for understanding transcription. Yet, this link remains poorly investigated. Here, we introduce a simple biophysical model where interphase chromosomes are described in terms of the folding of chromatin sequences composed of alternating blocks of fibers with different thicknesses and flexibilities, and we use it to study the influence of sequence disorder on chromosome behaviors in space and time. By employing extensive computer simulations, we thus demonstrate that chromosomes undergo noticeable conformational changes only on length-scales smaller than 10(5) basepairs and time-scales shorter than a few seconds, and we suggest there might exist effective upper bounds to the detection of chromosome reorganization in eukaryotes. We prove the relevance of our framework by modeling recent experimental FISH data on murine chromosomes. |
format | Online Article Text |
id | pubmed-4905689 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-49056892016-06-28 Large Scale Chromosome Folding Is Stable against Local Changes in Chromatin Structure Florescu, Ana-Maria Therizols, Pierre Rosa, Angelo PLoS Comput Biol Research Article Characterizing the link between small-scale chromatin structure and large-scale chromosome folding during interphase is a prerequisite for understanding transcription. Yet, this link remains poorly investigated. Here, we introduce a simple biophysical model where interphase chromosomes are described in terms of the folding of chromatin sequences composed of alternating blocks of fibers with different thicknesses and flexibilities, and we use it to study the influence of sequence disorder on chromosome behaviors in space and time. By employing extensive computer simulations, we thus demonstrate that chromosomes undergo noticeable conformational changes only on length-scales smaller than 10(5) basepairs and time-scales shorter than a few seconds, and we suggest there might exist effective upper bounds to the detection of chromosome reorganization in eukaryotes. We prove the relevance of our framework by modeling recent experimental FISH data on murine chromosomes. Public Library of Science 2016-06-13 /pmc/articles/PMC4905689/ /pubmed/27295501 http://dx.doi.org/10.1371/journal.pcbi.1004987 Text en © 2016 Florescu et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Article Florescu, Ana-Maria Therizols, Pierre Rosa, Angelo Large Scale Chromosome Folding Is Stable against Local Changes in Chromatin Structure |
title | Large Scale Chromosome Folding Is Stable against Local Changes in Chromatin Structure |
title_full | Large Scale Chromosome Folding Is Stable against Local Changes in Chromatin Structure |
title_fullStr | Large Scale Chromosome Folding Is Stable against Local Changes in Chromatin Structure |
title_full_unstemmed | Large Scale Chromosome Folding Is Stable against Local Changes in Chromatin Structure |
title_short | Large Scale Chromosome Folding Is Stable against Local Changes in Chromatin Structure |
title_sort | large scale chromosome folding is stable against local changes in chromatin structure |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4905689/ https://www.ncbi.nlm.nih.gov/pubmed/27295501 http://dx.doi.org/10.1371/journal.pcbi.1004987 |
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