Cargando…
Determination of GC content of Thermotoga maritima, Thermotoga neapolitana and Thermotoga thermarum strains: A GC dataset for higher level hierarchical classification
A total of 16 strains of hyperthermophilic Thermotoga complete genome sequences viz. Thermotoga maritima (AE000512, CP004077, CP007013, CP011107, NC_000853, NC_021214, NC_023151, NZ_CP011107, CP011108, NZ_CP011108, CP010967 & NZ_CP010967), Thermotoga neapolitana (CP000916, & NC_011978) and T...
Autores principales: | , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Elsevier
2016
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4906128/ https://www.ncbi.nlm.nih.gov/pubmed/27331105 http://dx.doi.org/10.1016/j.dib.2016.05.045 |
_version_ | 1782437366750773248 |
---|---|
author | Rekadwad, Bhagwan N. Khobragade, Chandrahasya N. |
author_facet | Rekadwad, Bhagwan N. Khobragade, Chandrahasya N. |
author_sort | Rekadwad, Bhagwan N. |
collection | PubMed |
description | A total of 16 strains of hyperthermophilic Thermotoga complete genome sequences viz. Thermotoga maritima (AE000512, CP004077, CP007013, CP011107, NC_000853, NC_021214, NC_023151, NZ_CP011107, CP011108, NZ_CP011108, CP010967 & NZ_CP010967), Thermotoga neapolitana (CP000916, & NC_011978) and Thermotoga thermarum (CP002351 & NC_015707) complete genome sequences were retrieved from NCBI BioSample database. ENDMEMO GC used for creation of data on GC content in Thermotoga sp. DNA sequences. Maximum GC content was observed in Thermotoga strains AE000512 & NC_000853 (69 %GC), followed by NZ_CP011108, CP011108, NZ_CP011107, NC_023151, NC_021214, CP011107 & CP004077 (68.5 %GC), followed by NZ_CP010967 & CP010967 (68.3 %GC), followed by CP000916, CP007013 & NC_011978 (68 %GC), followed by CP002351 & NC_015707 (67 %GC) strains. The use of GC dataset ratios helps in higher level hierarchical classification in Bacterial Systematics in addition to phenotypic and other genotypic characters. |
format | Online Article Text |
id | pubmed-4906128 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | Elsevier |
record_format | MEDLINE/PubMed |
spelling | pubmed-49061282016-06-21 Determination of GC content of Thermotoga maritima, Thermotoga neapolitana and Thermotoga thermarum strains: A GC dataset for higher level hierarchical classification Rekadwad, Bhagwan N. Khobragade, Chandrahasya N. Data Brief Data Article A total of 16 strains of hyperthermophilic Thermotoga complete genome sequences viz. Thermotoga maritima (AE000512, CP004077, CP007013, CP011107, NC_000853, NC_021214, NC_023151, NZ_CP011107, CP011108, NZ_CP011108, CP010967 & NZ_CP010967), Thermotoga neapolitana (CP000916, & NC_011978) and Thermotoga thermarum (CP002351 & NC_015707) complete genome sequences were retrieved from NCBI BioSample database. ENDMEMO GC used for creation of data on GC content in Thermotoga sp. DNA sequences. Maximum GC content was observed in Thermotoga strains AE000512 & NC_000853 (69 %GC), followed by NZ_CP011108, CP011108, NZ_CP011107, NC_023151, NC_021214, CP011107 & CP004077 (68.5 %GC), followed by NZ_CP010967 & CP010967 (68.3 %GC), followed by CP000916, CP007013 & NC_011978 (68 %GC), followed by CP002351 & NC_015707 (67 %GC) strains. The use of GC dataset ratios helps in higher level hierarchical classification in Bacterial Systematics in addition to phenotypic and other genotypic characters. Elsevier 2016-05-27 /pmc/articles/PMC4906128/ /pubmed/27331105 http://dx.doi.org/10.1016/j.dib.2016.05.045 Text en © 2016 The Authors http://creativecommons.org/licenses/by/4.0/ This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Data Article Rekadwad, Bhagwan N. Khobragade, Chandrahasya N. Determination of GC content of Thermotoga maritima, Thermotoga neapolitana and Thermotoga thermarum strains: A GC dataset for higher level hierarchical classification |
title | Determination of GC content of Thermotoga maritima, Thermotoga neapolitana and Thermotoga thermarum strains: A GC dataset for higher level hierarchical classification |
title_full | Determination of GC content of Thermotoga maritima, Thermotoga neapolitana and Thermotoga thermarum strains: A GC dataset for higher level hierarchical classification |
title_fullStr | Determination of GC content of Thermotoga maritima, Thermotoga neapolitana and Thermotoga thermarum strains: A GC dataset for higher level hierarchical classification |
title_full_unstemmed | Determination of GC content of Thermotoga maritima, Thermotoga neapolitana and Thermotoga thermarum strains: A GC dataset for higher level hierarchical classification |
title_short | Determination of GC content of Thermotoga maritima, Thermotoga neapolitana and Thermotoga thermarum strains: A GC dataset for higher level hierarchical classification |
title_sort | determination of gc content of thermotoga maritima, thermotoga neapolitana and thermotoga thermarum strains: a gc dataset for higher level hierarchical classification |
topic | Data Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4906128/ https://www.ncbi.nlm.nih.gov/pubmed/27331105 http://dx.doi.org/10.1016/j.dib.2016.05.045 |
work_keys_str_mv | AT rekadwadbhagwann determinationofgccontentofthermotogamaritimathermotoganeapolitanaandthermotogathermarumstrainsagcdatasetforhigherlevelhierarchicalclassification AT khobragadechandrahasyan determinationofgccontentofthermotogamaritimathermotoganeapolitanaandthermotogathermarumstrainsagcdatasetforhigherlevelhierarchicalclassification |