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Unraveling the rat blood genome-wide transcriptome after oral administration of lavender oil by a two-color dye-swap DNA microarray approach

Lavender oil (LO) is a commonly used essential oil in aromatherapy as non-traditional medicine. With an aim to demonstrate LO effects on the body, we have recently established an animal model investigating the influence of orally administered LO in rat tissues, genome-wide. In this brief, we investi...

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Autores principales: Hori, Motohide, Kubo, Hiroko, Shibato, Junko, Saito, Tomomi, Ogawa, Tetsuo, Wakamori, Minoru, Masuo, Yoshinori, Shioda, Seiji, Rakwal, Randeep
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4907047/
https://www.ncbi.nlm.nih.gov/pubmed/27330992
http://dx.doi.org/10.1016/j.gdata.2016.05.005
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author Hori, Motohide
Kubo, Hiroko
Shibato, Junko
Saito, Tomomi
Ogawa, Tetsuo
Wakamori, Minoru
Masuo, Yoshinori
Shioda, Seiji
Rakwal, Randeep
author_facet Hori, Motohide
Kubo, Hiroko
Shibato, Junko
Saito, Tomomi
Ogawa, Tetsuo
Wakamori, Minoru
Masuo, Yoshinori
Shioda, Seiji
Rakwal, Randeep
author_sort Hori, Motohide
collection PubMed
description Lavender oil (LO) is a commonly used essential oil in aromatherapy as non-traditional medicine. With an aim to demonstrate LO effects on the body, we have recently established an animal model investigating the influence of orally administered LO in rat tissues, genome-wide. In this brief, we investigate the effect of LO ingestion in the blood of rat. Rats were administered LO at usual therapeutic dose (5 mg/kg) in humans, and following collection of the venous blood from the heart and extraction of total RNA, the differentially expressed genes were screened using a 4 × 44-K whole-genome rat chip (Agilent microarray platform; Agilent Technologies, Palo Alto, CA, USA) in conjunction with a two-color dye-swap approach. A total of 834 differentially expressed genes in the blood were identified: 362 up-regulated and 472 down-regulated. These genes were functionally categorized using bioinformatics tools. The gene expression inventory of rat blood transcriptome under LO, a first report, has been deposited into the Gene Expression Omnibus (GEO): GSE67499. The data will be a valuable resource in examining the effects of natural products, and which could also serve as a human model for further functional analysis and investigation.
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spelling pubmed-49070472016-06-21 Unraveling the rat blood genome-wide transcriptome after oral administration of lavender oil by a two-color dye-swap DNA microarray approach Hori, Motohide Kubo, Hiroko Shibato, Junko Saito, Tomomi Ogawa, Tetsuo Wakamori, Minoru Masuo, Yoshinori Shioda, Seiji Rakwal, Randeep Genom Data Data in Brief Lavender oil (LO) is a commonly used essential oil in aromatherapy as non-traditional medicine. With an aim to demonstrate LO effects on the body, we have recently established an animal model investigating the influence of orally administered LO in rat tissues, genome-wide. In this brief, we investigate the effect of LO ingestion in the blood of rat. Rats were administered LO at usual therapeutic dose (5 mg/kg) in humans, and following collection of the venous blood from the heart and extraction of total RNA, the differentially expressed genes were screened using a 4 × 44-K whole-genome rat chip (Agilent microarray platform; Agilent Technologies, Palo Alto, CA, USA) in conjunction with a two-color dye-swap approach. A total of 834 differentially expressed genes in the blood were identified: 362 up-regulated and 472 down-regulated. These genes were functionally categorized using bioinformatics tools. The gene expression inventory of rat blood transcriptome under LO, a first report, has been deposited into the Gene Expression Omnibus (GEO): GSE67499. The data will be a valuable resource in examining the effects of natural products, and which could also serve as a human model for further functional analysis and investigation. Elsevier 2016-05-12 /pmc/articles/PMC4907047/ /pubmed/27330992 http://dx.doi.org/10.1016/j.gdata.2016.05.005 Text en © 2016 The Authors http://creativecommons.org/licenses/by/4.0/ This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Data in Brief
Hori, Motohide
Kubo, Hiroko
Shibato, Junko
Saito, Tomomi
Ogawa, Tetsuo
Wakamori, Minoru
Masuo, Yoshinori
Shioda, Seiji
Rakwal, Randeep
Unraveling the rat blood genome-wide transcriptome after oral administration of lavender oil by a two-color dye-swap DNA microarray approach
title Unraveling the rat blood genome-wide transcriptome after oral administration of lavender oil by a two-color dye-swap DNA microarray approach
title_full Unraveling the rat blood genome-wide transcriptome after oral administration of lavender oil by a two-color dye-swap DNA microarray approach
title_fullStr Unraveling the rat blood genome-wide transcriptome after oral administration of lavender oil by a two-color dye-swap DNA microarray approach
title_full_unstemmed Unraveling the rat blood genome-wide transcriptome after oral administration of lavender oil by a two-color dye-swap DNA microarray approach
title_short Unraveling the rat blood genome-wide transcriptome after oral administration of lavender oil by a two-color dye-swap DNA microarray approach
title_sort unraveling the rat blood genome-wide transcriptome after oral administration of lavender oil by a two-color dye-swap dna microarray approach
topic Data in Brief
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4907047/
https://www.ncbi.nlm.nih.gov/pubmed/27330992
http://dx.doi.org/10.1016/j.gdata.2016.05.005
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