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Unraveling the rat blood genome-wide transcriptome after oral administration of lavender oil by a two-color dye-swap DNA microarray approach
Lavender oil (LO) is a commonly used essential oil in aromatherapy as non-traditional medicine. With an aim to demonstrate LO effects on the body, we have recently established an animal model investigating the influence of orally administered LO in rat tissues, genome-wide. In this brief, we investi...
Autores principales: | , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Elsevier
2016
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4907047/ https://www.ncbi.nlm.nih.gov/pubmed/27330992 http://dx.doi.org/10.1016/j.gdata.2016.05.005 |
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author | Hori, Motohide Kubo, Hiroko Shibato, Junko Saito, Tomomi Ogawa, Tetsuo Wakamori, Minoru Masuo, Yoshinori Shioda, Seiji Rakwal, Randeep |
author_facet | Hori, Motohide Kubo, Hiroko Shibato, Junko Saito, Tomomi Ogawa, Tetsuo Wakamori, Minoru Masuo, Yoshinori Shioda, Seiji Rakwal, Randeep |
author_sort | Hori, Motohide |
collection | PubMed |
description | Lavender oil (LO) is a commonly used essential oil in aromatherapy as non-traditional medicine. With an aim to demonstrate LO effects on the body, we have recently established an animal model investigating the influence of orally administered LO in rat tissues, genome-wide. In this brief, we investigate the effect of LO ingestion in the blood of rat. Rats were administered LO at usual therapeutic dose (5 mg/kg) in humans, and following collection of the venous blood from the heart and extraction of total RNA, the differentially expressed genes were screened using a 4 × 44-K whole-genome rat chip (Agilent microarray platform; Agilent Technologies, Palo Alto, CA, USA) in conjunction with a two-color dye-swap approach. A total of 834 differentially expressed genes in the blood were identified: 362 up-regulated and 472 down-regulated. These genes were functionally categorized using bioinformatics tools. The gene expression inventory of rat blood transcriptome under LO, a first report, has been deposited into the Gene Expression Omnibus (GEO): GSE67499. The data will be a valuable resource in examining the effects of natural products, and which could also serve as a human model for further functional analysis and investigation. |
format | Online Article Text |
id | pubmed-4907047 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | Elsevier |
record_format | MEDLINE/PubMed |
spelling | pubmed-49070472016-06-21 Unraveling the rat blood genome-wide transcriptome after oral administration of lavender oil by a two-color dye-swap DNA microarray approach Hori, Motohide Kubo, Hiroko Shibato, Junko Saito, Tomomi Ogawa, Tetsuo Wakamori, Minoru Masuo, Yoshinori Shioda, Seiji Rakwal, Randeep Genom Data Data in Brief Lavender oil (LO) is a commonly used essential oil in aromatherapy as non-traditional medicine. With an aim to demonstrate LO effects on the body, we have recently established an animal model investigating the influence of orally administered LO in rat tissues, genome-wide. In this brief, we investigate the effect of LO ingestion in the blood of rat. Rats were administered LO at usual therapeutic dose (5 mg/kg) in humans, and following collection of the venous blood from the heart and extraction of total RNA, the differentially expressed genes were screened using a 4 × 44-K whole-genome rat chip (Agilent microarray platform; Agilent Technologies, Palo Alto, CA, USA) in conjunction with a two-color dye-swap approach. A total of 834 differentially expressed genes in the blood were identified: 362 up-regulated and 472 down-regulated. These genes were functionally categorized using bioinformatics tools. The gene expression inventory of rat blood transcriptome under LO, a first report, has been deposited into the Gene Expression Omnibus (GEO): GSE67499. The data will be a valuable resource in examining the effects of natural products, and which could also serve as a human model for further functional analysis and investigation. Elsevier 2016-05-12 /pmc/articles/PMC4907047/ /pubmed/27330992 http://dx.doi.org/10.1016/j.gdata.2016.05.005 Text en © 2016 The Authors http://creativecommons.org/licenses/by/4.0/ This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Data in Brief Hori, Motohide Kubo, Hiroko Shibato, Junko Saito, Tomomi Ogawa, Tetsuo Wakamori, Minoru Masuo, Yoshinori Shioda, Seiji Rakwal, Randeep Unraveling the rat blood genome-wide transcriptome after oral administration of lavender oil by a two-color dye-swap DNA microarray approach |
title | Unraveling the rat blood genome-wide transcriptome after oral administration of lavender oil by a two-color dye-swap DNA microarray approach |
title_full | Unraveling the rat blood genome-wide transcriptome after oral administration of lavender oil by a two-color dye-swap DNA microarray approach |
title_fullStr | Unraveling the rat blood genome-wide transcriptome after oral administration of lavender oil by a two-color dye-swap DNA microarray approach |
title_full_unstemmed | Unraveling the rat blood genome-wide transcriptome after oral administration of lavender oil by a two-color dye-swap DNA microarray approach |
title_short | Unraveling the rat blood genome-wide transcriptome after oral administration of lavender oil by a two-color dye-swap DNA microarray approach |
title_sort | unraveling the rat blood genome-wide transcriptome after oral administration of lavender oil by a two-color dye-swap dna microarray approach |
topic | Data in Brief |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4907047/ https://www.ncbi.nlm.nih.gov/pubmed/27330992 http://dx.doi.org/10.1016/j.gdata.2016.05.005 |
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