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Dataset for transcriptional response of barley (Hordeum vulgare) exposed to drought and subsequent re-watering

Barley (Hordeum vulgare) is an economically important species, which can be cultivated in environmentally adverse conditions due to its higher tolerance in contrast to other cereal crops. The draft of H. vulgare genome is available already for couple of years; however its functional annotation is st...

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Detalles Bibliográficos
Autores principales: Kokáš, Filip, Vojta, Petr, Galuszka, Petr
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4908270/
https://www.ncbi.nlm.nih.gov/pubmed/27331111
http://dx.doi.org/10.1016/j.dib.2016.05.051
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author Kokáš, Filip
Vojta, Petr
Galuszka, Petr
author_facet Kokáš, Filip
Vojta, Petr
Galuszka, Petr
author_sort Kokáš, Filip
collection PubMed
description Barley (Hordeum vulgare) is an economically important species, which can be cultivated in environmentally adverse conditions due to its higher tolerance in contrast to other cereal crops. The draft of H. vulgare genome is available already for couple of years; however its functional annotation is still incomplete. All available databases were searched to expand current annotation. The improved annotation was used to describe processes and genes regulated in transgenic lines showing higher tolerance to drought in our associated article, doi:10.1016/j.nbt.2016.01.010 (Vojta et al., 2016) [1]. Here we present whole transcriptome response, using extended annotation, to severe drought stress and subsequent re-watering in wild-type barley plants in stem elongation phase of growth. Up- and down-regulated genes fall into distinct GO categories and these enriched by stress and revitalization are highlighted. Transcriptomic data were evaluated separately for root and aerial tissues.
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spelling pubmed-49082702016-06-21 Dataset for transcriptional response of barley (Hordeum vulgare) exposed to drought and subsequent re-watering Kokáš, Filip Vojta, Petr Galuszka, Petr Data Brief Data Article Barley (Hordeum vulgare) is an economically important species, which can be cultivated in environmentally adverse conditions due to its higher tolerance in contrast to other cereal crops. The draft of H. vulgare genome is available already for couple of years; however its functional annotation is still incomplete. All available databases were searched to expand current annotation. The improved annotation was used to describe processes and genes regulated in transgenic lines showing higher tolerance to drought in our associated article, doi:10.1016/j.nbt.2016.01.010 (Vojta et al., 2016) [1]. Here we present whole transcriptome response, using extended annotation, to severe drought stress and subsequent re-watering in wild-type barley plants in stem elongation phase of growth. Up- and down-regulated genes fall into distinct GO categories and these enriched by stress and revitalization are highlighted. Transcriptomic data were evaluated separately for root and aerial tissues. Elsevier 2016-05-30 /pmc/articles/PMC4908270/ /pubmed/27331111 http://dx.doi.org/10.1016/j.dib.2016.05.051 Text en © 2016 The Authors http://creativecommons.org/licenses/by/4.0/ This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Data Article
Kokáš, Filip
Vojta, Petr
Galuszka, Petr
Dataset for transcriptional response of barley (Hordeum vulgare) exposed to drought and subsequent re-watering
title Dataset for transcriptional response of barley (Hordeum vulgare) exposed to drought and subsequent re-watering
title_full Dataset for transcriptional response of barley (Hordeum vulgare) exposed to drought and subsequent re-watering
title_fullStr Dataset for transcriptional response of barley (Hordeum vulgare) exposed to drought and subsequent re-watering
title_full_unstemmed Dataset for transcriptional response of barley (Hordeum vulgare) exposed to drought and subsequent re-watering
title_short Dataset for transcriptional response of barley (Hordeum vulgare) exposed to drought and subsequent re-watering
title_sort dataset for transcriptional response of barley (hordeum vulgare) exposed to drought and subsequent re-watering
topic Data Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4908270/
https://www.ncbi.nlm.nih.gov/pubmed/27331111
http://dx.doi.org/10.1016/j.dib.2016.05.051
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