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Dataset for transcriptional response of barley (Hordeum vulgare) exposed to drought and subsequent re-watering
Barley (Hordeum vulgare) is an economically important species, which can be cultivated in environmentally adverse conditions due to its higher tolerance in contrast to other cereal crops. The draft of H. vulgare genome is available already for couple of years; however its functional annotation is st...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Elsevier
2016
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4908270/ https://www.ncbi.nlm.nih.gov/pubmed/27331111 http://dx.doi.org/10.1016/j.dib.2016.05.051 |
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author | Kokáš, Filip Vojta, Petr Galuszka, Petr |
author_facet | Kokáš, Filip Vojta, Petr Galuszka, Petr |
author_sort | Kokáš, Filip |
collection | PubMed |
description | Barley (Hordeum vulgare) is an economically important species, which can be cultivated in environmentally adverse conditions due to its higher tolerance in contrast to other cereal crops. The draft of H. vulgare genome is available already for couple of years; however its functional annotation is still incomplete. All available databases were searched to expand current annotation. The improved annotation was used to describe processes and genes regulated in transgenic lines showing higher tolerance to drought in our associated article, doi:10.1016/j.nbt.2016.01.010 (Vojta et al., 2016) [1]. Here we present whole transcriptome response, using extended annotation, to severe drought stress and subsequent re-watering in wild-type barley plants in stem elongation phase of growth. Up- and down-regulated genes fall into distinct GO categories and these enriched by stress and revitalization are highlighted. Transcriptomic data were evaluated separately for root and aerial tissues. |
format | Online Article Text |
id | pubmed-4908270 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | Elsevier |
record_format | MEDLINE/PubMed |
spelling | pubmed-49082702016-06-21 Dataset for transcriptional response of barley (Hordeum vulgare) exposed to drought and subsequent re-watering Kokáš, Filip Vojta, Petr Galuszka, Petr Data Brief Data Article Barley (Hordeum vulgare) is an economically important species, which can be cultivated in environmentally adverse conditions due to its higher tolerance in contrast to other cereal crops. The draft of H. vulgare genome is available already for couple of years; however its functional annotation is still incomplete. All available databases were searched to expand current annotation. The improved annotation was used to describe processes and genes regulated in transgenic lines showing higher tolerance to drought in our associated article, doi:10.1016/j.nbt.2016.01.010 (Vojta et al., 2016) [1]. Here we present whole transcriptome response, using extended annotation, to severe drought stress and subsequent re-watering in wild-type barley plants in stem elongation phase of growth. Up- and down-regulated genes fall into distinct GO categories and these enriched by stress and revitalization are highlighted. Transcriptomic data were evaluated separately for root and aerial tissues. Elsevier 2016-05-30 /pmc/articles/PMC4908270/ /pubmed/27331111 http://dx.doi.org/10.1016/j.dib.2016.05.051 Text en © 2016 The Authors http://creativecommons.org/licenses/by/4.0/ This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Data Article Kokáš, Filip Vojta, Petr Galuszka, Petr Dataset for transcriptional response of barley (Hordeum vulgare) exposed to drought and subsequent re-watering |
title | Dataset for transcriptional response of barley (Hordeum vulgare) exposed to drought and subsequent re-watering |
title_full | Dataset for transcriptional response of barley (Hordeum vulgare) exposed to drought and subsequent re-watering |
title_fullStr | Dataset for transcriptional response of barley (Hordeum vulgare) exposed to drought and subsequent re-watering |
title_full_unstemmed | Dataset for transcriptional response of barley (Hordeum vulgare) exposed to drought and subsequent re-watering |
title_short | Dataset for transcriptional response of barley (Hordeum vulgare) exposed to drought and subsequent re-watering |
title_sort | dataset for transcriptional response of barley (hordeum vulgare) exposed to drought and subsequent re-watering |
topic | Data Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4908270/ https://www.ncbi.nlm.nih.gov/pubmed/27331111 http://dx.doi.org/10.1016/j.dib.2016.05.051 |
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