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phRAIDER: Pattern-Hunter based Rapid Ab Initio Detection of Elementary Repeats

Motivation: Transposable elements (TEs) and repetitive DNA make up a sizable fraction of Eukaryotic genomes, and their annotation is crucial to the study of the structure, organization, and evolution of any newly sequenced genome. Although RepeatMasker and nHMMER are useful for identifying these rep...

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Detalles Bibliográficos
Autores principales:	Schaeffer, Carly E., Figueroa, Nathaniel D., Liu, Xiaolin, Karro, John E.
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Oxford University Press 2016
Materias:	Ismb 2016 Proceedings July 8 to July 12, 2016, Orlando, Florida
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4908342/ https://www.ncbi.nlm.nih.gov/pubmed/27307619 http://dx.doi.org/10.1093/bioinformatics/btw258

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