Cargando…

Diversity and population-genetic properties of copy number variations and multicopy genes in cattle

The diversity and population genetics of copy number variation (CNV) in domesticated animals are not well understood. In this study, we analysed 75 genomes of major taurine and indicine cattle breeds (including Angus, Brahman, Gir, Holstein, Jersey, Limousin, Nelore, and Romagnola), sequenced to 11-...

Descripción completa

Detalles Bibliográficos
Autores principales:	Bickhart, Derek M., Xu, Lingyang, Hutchison, Jana L., Cole, John B., Null, Daniel J., Schroeder, Steven G., Song, Jiuzhou, Garcia, Jose Fernando, Sonstegard, Tad S., Van Tassell, Curtis P., Schnabel, Robert D., Taylor, Jeremy F., Lewin, Harris A., Liu, George E.
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Oxford University Press 2016
Materias:	Full Papers
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4909312/ https://www.ncbi.nlm.nih.gov/pubmed/27085184 http://dx.doi.org/10.1093/dnares/dsw013

Ejemplares similares

Population-genetic properties of differentiated copy number variations in cattle
por: Xu, Lingyang, et al.
Publicado: (2016)

Genomic characteristics of cattle copy number variations
por: Hou, Yali, et al.
Publicado: (2011)

Comparative analyses across cattle genders and breeds reveal the pitfalls caused by false positive and lineage-differential copy number variations
por: Zhou, Yang, et al.
Publicado: (2016)

Systematic Profiling of Short Tandem Repeats in the Cattle Genome
por: Xu, Lingyang, et al.
Publicado: (2016)

Fine mapping of copy number variations on two cattle genome assemblies using high density SNP array
por: Hou, Yali, et al.
Publicado: (2012)

Identification of a Nonsense Mutation in CWC15 Associated with Decreased Reproductive Efficiency in Jersey Cattle
por: Sonstegard, Tad S., et al.
Publicado: (2013)

Genome wide CNV analysis reveals additional variants associated with milk production traits in Holsteins
por: Xu, Lingyang, et al.
Publicado: (2014)

Bovine Exome Sequence Analysis and Targeted SNP Genotyping of Recessive Fertility Defects BH1, HH2, and HH3 Reveal a Putative Causative Mutation in SMC2 for HH3
por: McClure, Matthew C., et al.
Publicado: (2014)

Fine Mapping for Weaver Syndrome in Brown Swiss Cattle and the Identification of 41 Concordant Mutations across NRCAM, PNPLA8 and CTTNBP2
por: McClure, Matthew, et al.
Publicado: (2013)

Genomic predictions combining SNP markers and copy number variations in Nellore cattle
por: Hay, El Hamidi A., et al.
Publicado: (2018)

Reduced representation bisulphite sequencing of ten bovine somatic tissues reveals DNA methylation patterns and their impacts on gene expression
por: Zhou, Yang, et al.
Publicado: (2016)

Assessing signatures of selection through variation in linkage disequilibrium between taurine and indicine cattle
por: Pérez O’Brien, Ana M, et al.
Publicado: (2014)

Genomic divergence of zebu and taurine cattle identified through high-density SNP genotyping
por: Porto-Neto, Laercio R, et al.
Publicado: (2013)

The Relationship between Runs of Homozygosity and Inbreeding in Jersey Cattle under Selection
por: Kim, Eui-Soo, et al.
Publicado: (2015)

Towards the detection of copy number variation from single sperm sequencing in cattle
por: Yang, Liu, et al.
Publicado: (2022)

Genomic divergences among cattle, dog and human estimated from large-scale alignments of genomic sequences
por: Liu, George E, et al.
Publicado: (2006)

Comparative analyses of sperm DNA methylomes among human, mouse and cattle provide insights into epigenomic evolution and complex traits
por: Fang, Lingzhao, et al.
Publicado: (2019)

Misidentification of runs of homozygosity islands in cattle caused by interference with copy number variation or large intermarker distances
por: Nandolo, Wilson, et al.
Publicado: (2018)

Integrating Signals from Sperm Methylome Analysis and Genome-Wide Association Study for a Better Understanding of Male Fertility in Cattle
por: Fang, Lingzhao, et al.
Publicado: (2019)

Effect of Artificial Selection on Runs of Homozygosity in U.S. Holstein Cattle
por: Kim, Eui-Soo, et al.
Publicado: (2013)

A Genetic Investigation of Island Jersey Cattle, the Foundation of the Jersey Breed: Comparing Population Structure and Selection to Guernsey, Holstein, and United States Jersey Cattle
por: Huson, Heather J., et al.
Publicado: (2020)

Genome changes due to artificial selection in U.S. Holstein cattle
por: Ma, Li, et al.
Publicado: (2019)

Diet induced the change of mtDNA copy number and metabolism in Angus cattle
por: Bai, Ying, et al.
Publicado: (2020)

Convergent Evolution of Slick Coat in Cattle through Truncation Mutations in the Prolactin Receptor
por: Porto-Neto, Laercio R., et al.
Publicado: (2018)

Correction to: Diet induced the change of mtDNA copy number and metabolism in Angus cattle
por: Bai, Ying, et al.
Publicado: (2020)

Development and Characterization of a High Density SNP Genotyping Assay for Cattle
por: Matukumalli, Lakshmi K., et al.
Publicado: (2009)

Digital Genotyping of Macrosatellites and Multicopy Genes Reveals Novel Biological Functions Associated with Copy Number Variation of Large Tandem Repeats
por: Brahmachary, Manisha, et al.
Publicado: (2014)

Comparative Analysis of CNV Calling Algorithms: Literature Survey and a Case Study Using Bovine High-Density SNP Data
por: Xu, Lingyang, et al.
Publicado: (2013)

Imputation of Microsatellite Alleles from Dense SNP Genotypes for Parental Verification
por: McClure, Matthew, et al.
Publicado: (2012)

Genetic Association Analysis of Copy Number Variations for Meat Quality in Beef Cattle
por: Wu, Jiayuan, et al.
Publicado: (2023)

Characterization of Copy Number Variation’s Potential Role in Marek’s Disease
por: Xu, Lingyang, et al.
Publicado: (2017)

Copy number variation in Y chromosome multicopy genes is linked to a paternal parent-of-origin effect on CNS autoimmune disease in female offspring
por: Case, Laure K, et al.
Publicado: (2015)

Genome-wide CNV analysis reveals variants associated with growth traits in Bos indicus
por: Zhou, Yang, et al.
Publicado: (2016)

Comparative analyses of copy number variations between Bos taurus and Bos indicus
por: Hu, Yan, et al.
Publicado: (2020)

A Validated Genome Wide Association Study to Breed Cattle Adapted to an Environment Altered by Climate Change
por: Hayes, Ben J., et al.
Publicado: (2009)

Detecting Loci under Recent Positive Selection in Dairy and Beef Cattle by Combining Different Genome-Wide Scan Methods
por: Utsunomiya, Yuri Tani, et al.
Publicado: (2013)

Accuracy of genotype imputation in Nelore cattle
por: Carvalheiro, Roberto, et al.
Publicado: (2014)

Comparative whole genome DNA methylation profiling of cattle sperm and somatic tissues reveals striking hypomethylated patterns in sperm
por: Zhou, Yang, et al.
Publicado: (2018)

Gaur genome reveals expansion of sperm odorant receptors in domesticated cattle
por: Low, Wai Yee, et al.
Publicado: (2022)

Accuracy of genomic predictions in Bos indicus (Nellore) cattle
por: Neves, Haroldo HR, et al.
Publicado: (2014)

Cannot write session to /tmp/vufind_sessions/sess_b6e709ik52r2f7svjo0cmq0ts6