Cargando…

Advances in DNA metabarcoding for food and wildlife forensic species identification

Species identification using DNA barcodes has been widely adopted by forensic scientists as an effective molecular tool for tracking adulterations in food and for analysing samples from alleged wildlife crime incidents. DNA barcoding is an approach that involves sequencing of short DNA sequences fro...

Descripción completa

Detalles Bibliográficos
Autores principales: Staats, Martijn, Arulandhu, Alfred J., Gravendeel, Barbara, Holst-Jensen, Arne, Scholtens, Ingrid, Peelen, Tamara, Prins, Theo W., Kok, Esther
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer Berlin Heidelberg 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4909793/
https://www.ncbi.nlm.nih.gov/pubmed/27178552
http://dx.doi.org/10.1007/s00216-016-9595-8
_version_ 1782437883945156608
author Staats, Martijn
Arulandhu, Alfred J.
Gravendeel, Barbara
Holst-Jensen, Arne
Scholtens, Ingrid
Peelen, Tamara
Prins, Theo W.
Kok, Esther
author_facet Staats, Martijn
Arulandhu, Alfred J.
Gravendeel, Barbara
Holst-Jensen, Arne
Scholtens, Ingrid
Peelen, Tamara
Prins, Theo W.
Kok, Esther
author_sort Staats, Martijn
collection PubMed
description Species identification using DNA barcodes has been widely adopted by forensic scientists as an effective molecular tool for tracking adulterations in food and for analysing samples from alleged wildlife crime incidents. DNA barcoding is an approach that involves sequencing of short DNA sequences from standardized regions and comparison to a reference database as a molecular diagnostic tool in species identification. In recent years, remarkable progress has been made towards developing DNA metabarcoding strategies, which involves next-generation sequencing of DNA barcodes for the simultaneous detection of multiple species in complex samples. Metabarcoding strategies can be used in processed materials containing highly degraded DNA e.g. for the identification of endangered and hazardous species in traditional medicine. This review aims to provide insight into advances of plant and animal DNA barcoding and highlights current practices and recent developments for DNA metabarcoding of food and wildlife forensic samples from a practical point of view. Special emphasis is placed on new developments for identifying species listed in the Convention on International Trade of Endangered Species (CITES) appendices for which reliable methods for species identification may signal and/or prevent illegal trade. Current technological developments and challenges of DNA metabarcoding for forensic scientists will be assessed in the light of stakeholders’ needs.
format Online
Article
Text
id pubmed-4909793
institution National Center for Biotechnology Information
language English
publishDate 2016
publisher Springer Berlin Heidelberg
record_format MEDLINE/PubMed
spelling pubmed-49097932016-07-05 Advances in DNA metabarcoding for food and wildlife forensic species identification Staats, Martijn Arulandhu, Alfred J. Gravendeel, Barbara Holst-Jensen, Arne Scholtens, Ingrid Peelen, Tamara Prins, Theo W. Kok, Esther Anal Bioanal Chem Review Species identification using DNA barcodes has been widely adopted by forensic scientists as an effective molecular tool for tracking adulterations in food and for analysing samples from alleged wildlife crime incidents. DNA barcoding is an approach that involves sequencing of short DNA sequences from standardized regions and comparison to a reference database as a molecular diagnostic tool in species identification. In recent years, remarkable progress has been made towards developing DNA metabarcoding strategies, which involves next-generation sequencing of DNA barcodes for the simultaneous detection of multiple species in complex samples. Metabarcoding strategies can be used in processed materials containing highly degraded DNA e.g. for the identification of endangered and hazardous species in traditional medicine. This review aims to provide insight into advances of plant and animal DNA barcoding and highlights current practices and recent developments for DNA metabarcoding of food and wildlife forensic samples from a practical point of view. Special emphasis is placed on new developments for identifying species listed in the Convention on International Trade of Endangered Species (CITES) appendices for which reliable methods for species identification may signal and/or prevent illegal trade. Current technological developments and challenges of DNA metabarcoding for forensic scientists will be assessed in the light of stakeholders’ needs. Springer Berlin Heidelberg 2016-05-13 2016 /pmc/articles/PMC4909793/ /pubmed/27178552 http://dx.doi.org/10.1007/s00216-016-9595-8 Text en © The Author(s) 2016 Open Access This article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made.
spellingShingle Review
Staats, Martijn
Arulandhu, Alfred J.
Gravendeel, Barbara
Holst-Jensen, Arne
Scholtens, Ingrid
Peelen, Tamara
Prins, Theo W.
Kok, Esther
Advances in DNA metabarcoding for food and wildlife forensic species identification
title Advances in DNA metabarcoding for food and wildlife forensic species identification
title_full Advances in DNA metabarcoding for food and wildlife forensic species identification
title_fullStr Advances in DNA metabarcoding for food and wildlife forensic species identification
title_full_unstemmed Advances in DNA metabarcoding for food and wildlife forensic species identification
title_short Advances in DNA metabarcoding for food and wildlife forensic species identification
title_sort advances in dna metabarcoding for food and wildlife forensic species identification
topic Review
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4909793/
https://www.ncbi.nlm.nih.gov/pubmed/27178552
http://dx.doi.org/10.1007/s00216-016-9595-8
work_keys_str_mv AT staatsmartijn advancesindnametabarcodingforfoodandwildlifeforensicspeciesidentification
AT arulandhualfredj advancesindnametabarcodingforfoodandwildlifeforensicspeciesidentification
AT gravendeelbarbara advancesindnametabarcodingforfoodandwildlifeforensicspeciesidentification
AT holstjensenarne advancesindnametabarcodingforfoodandwildlifeforensicspeciesidentification
AT scholtensingrid advancesindnametabarcodingforfoodandwildlifeforensicspeciesidentification
AT peelentamara advancesindnametabarcodingforfoodandwildlifeforensicspeciesidentification
AT prinstheow advancesindnametabarcodingforfoodandwildlifeforensicspeciesidentification
AT kokesther advancesindnametabarcodingforfoodandwildlifeforensicspeciesidentification