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Absolute nutrient concentration measurements in cell culture media: (1)H q-NMR spectra and data to compare the efficiency of pH-controlled protein precipitation versus CPMG or post-processing filtering approaches

The NMR spectra and data reported in this article refer to the research article titled “A simple and accurate protocol for absolute polar metabolite quantification in cell cultures using q-NMR” [1]. We provide the (1)H q-NMR spectra of cell culture media (DMEM) after removal of serum proteins, which...

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Autores principales: Goldoni, Luca, Beringhelli, Tiziana, Rocchia, Walter, Realini, Natalia, Piomelli, Daniele
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4909824/
https://www.ncbi.nlm.nih.gov/pubmed/27331118
http://dx.doi.org/10.1016/j.dib.2016.05.054
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author Goldoni, Luca
Beringhelli, Tiziana
Rocchia, Walter
Realini, Natalia
Piomelli, Daniele
author_facet Goldoni, Luca
Beringhelli, Tiziana
Rocchia, Walter
Realini, Natalia
Piomelli, Daniele
author_sort Goldoni, Luca
collection PubMed
description The NMR spectra and data reported in this article refer to the research article titled “A simple and accurate protocol for absolute polar metabolite quantification in cell cultures using q-NMR” [1]. We provide the (1)H q-NMR spectra of cell culture media (DMEM) after removal of serum proteins, which show the different efficiency of various precipitating solvents, the solvent/DMEM ratios, and pH of the solution. We compare the data of the absolute nutrient concentrations, measured by PULCON external standard method, before and after precipitation of serum proteins and those obtained using CPMG (Carr-Purcell-Meiboom-Gill) sequence or applying post-processing filtering algorithms to remove, from the (1)H q-NMR spectra, the proteins signal contribution. For each of these approaches, the percent error in the absolute value of every measurement for all the nutrients is also plotted as accuracy assessment.
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spelling pubmed-49098242016-06-21 Absolute nutrient concentration measurements in cell culture media: (1)H q-NMR spectra and data to compare the efficiency of pH-controlled protein precipitation versus CPMG or post-processing filtering approaches Goldoni, Luca Beringhelli, Tiziana Rocchia, Walter Realini, Natalia Piomelli, Daniele Data Brief Data Article The NMR spectra and data reported in this article refer to the research article titled “A simple and accurate protocol for absolute polar metabolite quantification in cell cultures using q-NMR” [1]. We provide the (1)H q-NMR spectra of cell culture media (DMEM) after removal of serum proteins, which show the different efficiency of various precipitating solvents, the solvent/DMEM ratios, and pH of the solution. We compare the data of the absolute nutrient concentrations, measured by PULCON external standard method, before and after precipitation of serum proteins and those obtained using CPMG (Carr-Purcell-Meiboom-Gill) sequence or applying post-processing filtering algorithms to remove, from the (1)H q-NMR spectra, the proteins signal contribution. For each of these approaches, the percent error in the absolute value of every measurement for all the nutrients is also plotted as accuracy assessment. Elsevier 2016-05-30 /pmc/articles/PMC4909824/ /pubmed/27331118 http://dx.doi.org/10.1016/j.dib.2016.05.054 Text en © 2016 The Authors http://creativecommons.org/licenses/by/4.0/ This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Data Article
Goldoni, Luca
Beringhelli, Tiziana
Rocchia, Walter
Realini, Natalia
Piomelli, Daniele
Absolute nutrient concentration measurements in cell culture media: (1)H q-NMR spectra and data to compare the efficiency of pH-controlled protein precipitation versus CPMG or post-processing filtering approaches
title Absolute nutrient concentration measurements in cell culture media: (1)H q-NMR spectra and data to compare the efficiency of pH-controlled protein precipitation versus CPMG or post-processing filtering approaches
title_full Absolute nutrient concentration measurements in cell culture media: (1)H q-NMR spectra and data to compare the efficiency of pH-controlled protein precipitation versus CPMG or post-processing filtering approaches
title_fullStr Absolute nutrient concentration measurements in cell culture media: (1)H q-NMR spectra and data to compare the efficiency of pH-controlled protein precipitation versus CPMG or post-processing filtering approaches
title_full_unstemmed Absolute nutrient concentration measurements in cell culture media: (1)H q-NMR spectra and data to compare the efficiency of pH-controlled protein precipitation versus CPMG or post-processing filtering approaches
title_short Absolute nutrient concentration measurements in cell culture media: (1)H q-NMR spectra and data to compare the efficiency of pH-controlled protein precipitation versus CPMG or post-processing filtering approaches
title_sort absolute nutrient concentration measurements in cell culture media: (1)h q-nmr spectra and data to compare the efficiency of ph-controlled protein precipitation versus cpmg or post-processing filtering approaches
topic Data Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4909824/
https://www.ncbi.nlm.nih.gov/pubmed/27331118
http://dx.doi.org/10.1016/j.dib.2016.05.054
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