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Genome annotation of a Saccharomyces sp. lager brewer's yeast

The genome of lager brewer's yeast is a hybrid, with Saccharomyces eubayanus and Saccharomyces cerevisiae as sub-genomes. Due to their specific use in the beer industry, relatively little information is available. The genome of brewing yeast was sequenced and annotated in this study. We obtaine...

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Autores principales: De León-Medina, Patricia Marcela, Elizondo-González, Ramiro, Damas-Buenrostro, Luis Cástulo, Geertman, Jan-Maarten, Van den Broek, Marcel, Galán-Wong, Luis Jesús, Ortiz-López, Rocío, Pereyra-Alférez, Benito
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4909825/
https://www.ncbi.nlm.nih.gov/pubmed/27330999
http://dx.doi.org/10.1016/j.gdata.2016.05.009
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author De León-Medina, Patricia Marcela
Elizondo-González, Ramiro
Damas-Buenrostro, Luis Cástulo
Geertman, Jan-Maarten
Van den Broek, Marcel
Galán-Wong, Luis Jesús
Ortiz-López, Rocío
Pereyra-Alférez, Benito
author_facet De León-Medina, Patricia Marcela
Elizondo-González, Ramiro
Damas-Buenrostro, Luis Cástulo
Geertman, Jan-Maarten
Van den Broek, Marcel
Galán-Wong, Luis Jesús
Ortiz-López, Rocío
Pereyra-Alférez, Benito
author_sort De León-Medina, Patricia Marcela
collection PubMed
description The genome of lager brewer's yeast is a hybrid, with Saccharomyces eubayanus and Saccharomyces cerevisiae as sub-genomes. Due to their specific use in the beer industry, relatively little information is available. The genome of brewing yeast was sequenced and annotated in this study. We obtained a genome size of 22.7 Mbp that consisted of 133 scaffolds, with 65 scaffolds larger than 10 kbp. With respect to the annotation, 9939 genes were obtained, and when they were submitted to a local alignment, we found that 53.93% of these genes corresponded to S. cerevisiae, while another 42.86% originated from S. eubayanus. Our results confirm that our strain is a hybrid of at least two different genomes.
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spelling pubmed-49098252016-06-21 Genome annotation of a Saccharomyces sp. lager brewer's yeast De León-Medina, Patricia Marcela Elizondo-González, Ramiro Damas-Buenrostro, Luis Cástulo Geertman, Jan-Maarten Van den Broek, Marcel Galán-Wong, Luis Jesús Ortiz-López, Rocío Pereyra-Alférez, Benito Genom Data Regular Article The genome of lager brewer's yeast is a hybrid, with Saccharomyces eubayanus and Saccharomyces cerevisiae as sub-genomes. Due to their specific use in the beer industry, relatively little information is available. The genome of brewing yeast was sequenced and annotated in this study. We obtained a genome size of 22.7 Mbp that consisted of 133 scaffolds, with 65 scaffolds larger than 10 kbp. With respect to the annotation, 9939 genes were obtained, and when they were submitted to a local alignment, we found that 53.93% of these genes corresponded to S. cerevisiae, while another 42.86% originated from S. eubayanus. Our results confirm that our strain is a hybrid of at least two different genomes. Elsevier 2016-05-21 /pmc/articles/PMC4909825/ /pubmed/27330999 http://dx.doi.org/10.1016/j.gdata.2016.05.009 Text en © 2016 Asbestos Diseases Research Institute, Sydney Australia http://creativecommons.org/licenses/by-nc-nd/4.0/ This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).
spellingShingle Regular Article
De León-Medina, Patricia Marcela
Elizondo-González, Ramiro
Damas-Buenrostro, Luis Cástulo
Geertman, Jan-Maarten
Van den Broek, Marcel
Galán-Wong, Luis Jesús
Ortiz-López, Rocío
Pereyra-Alférez, Benito
Genome annotation of a Saccharomyces sp. lager brewer's yeast
title Genome annotation of a Saccharomyces sp. lager brewer's yeast
title_full Genome annotation of a Saccharomyces sp. lager brewer's yeast
title_fullStr Genome annotation of a Saccharomyces sp. lager brewer's yeast
title_full_unstemmed Genome annotation of a Saccharomyces sp. lager brewer's yeast
title_short Genome annotation of a Saccharomyces sp. lager brewer's yeast
title_sort genome annotation of a saccharomyces sp. lager brewer's yeast
topic Regular Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4909825/
https://www.ncbi.nlm.nih.gov/pubmed/27330999
http://dx.doi.org/10.1016/j.gdata.2016.05.009
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