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Forecasting influenza outbreak dynamics in Melbourne from Internet search query surveillance data

BACKGROUND: Accurate forecasting of seasonal influenza epidemics is of great concern to healthcare providers in temperate climates, as these epidemics vary substantially in their size, timing and duration from year to year, making it a challenge to deliver timely and proportionate responses. Previou...

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Autores principales: Moss, Robert, Zarebski, Alexander, Dawson, Peter, McCaw, James M.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4910172/
https://www.ncbi.nlm.nih.gov/pubmed/26859411
http://dx.doi.org/10.1111/irv.12376
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author Moss, Robert
Zarebski, Alexander
Dawson, Peter
McCaw, James M.
author_facet Moss, Robert
Zarebski, Alexander
Dawson, Peter
McCaw, James M.
author_sort Moss, Robert
collection PubMed
description BACKGROUND: Accurate forecasting of seasonal influenza epidemics is of great concern to healthcare providers in temperate climates, as these epidemics vary substantially in their size, timing and duration from year to year, making it a challenge to deliver timely and proportionate responses. Previous studies have shown that Bayesian estimation techniques can accurately predict when an influenza epidemic will peak many weeks in advance, using existing surveillance data, but these methods must be tailored both to the target population and to the surveillance system. OBJECTIVES: Our aim was to evaluate whether forecasts of similar accuracy could be obtained for metropolitan Melbourne (Australia). METHODS: We used the bootstrap particle filter and a mechanistic infection model to generate epidemic forecasts for metropolitan Melbourne (Australia) from weekly Internet search query surveillance data reported by Google Flu Trends for 2006–14. RESULTS AND CONCLUSIONS: Optimal observation models were selected from hundreds of candidates using a novel approach that treats forecasts akin to receiver operating characteristic (ROC) curves. We show that the timing of the epidemic peak can be accurately predicted 4–6 weeks in advance, but that the magnitude of the epidemic peak and the overall burden are much harder to predict. We then discuss how the infection and observation models and the filtering process may be refined to improve forecast robustness, thereby improving the utility of these methods for healthcare decision support.
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spelling pubmed-49101722016-07-01 Forecasting influenza outbreak dynamics in Melbourne from Internet search query surveillance data Moss, Robert Zarebski, Alexander Dawson, Peter McCaw, James M. Influenza Other Respir Viruses Original Articles BACKGROUND: Accurate forecasting of seasonal influenza epidemics is of great concern to healthcare providers in temperate climates, as these epidemics vary substantially in their size, timing and duration from year to year, making it a challenge to deliver timely and proportionate responses. Previous studies have shown that Bayesian estimation techniques can accurately predict when an influenza epidemic will peak many weeks in advance, using existing surveillance data, but these methods must be tailored both to the target population and to the surveillance system. OBJECTIVES: Our aim was to evaluate whether forecasts of similar accuracy could be obtained for metropolitan Melbourne (Australia). METHODS: We used the bootstrap particle filter and a mechanistic infection model to generate epidemic forecasts for metropolitan Melbourne (Australia) from weekly Internet search query surveillance data reported by Google Flu Trends for 2006–14. RESULTS AND CONCLUSIONS: Optimal observation models were selected from hundreds of candidates using a novel approach that treats forecasts akin to receiver operating characteristic (ROC) curves. We show that the timing of the epidemic peak can be accurately predicted 4–6 weeks in advance, but that the magnitude of the epidemic peak and the overall burden are much harder to predict. We then discuss how the infection and observation models and the filtering process may be refined to improve forecast robustness, thereby improving the utility of these methods for healthcare decision support. John Wiley and Sons Inc. 2016-03-07 2016-07 /pmc/articles/PMC4910172/ /pubmed/26859411 http://dx.doi.org/10.1111/irv.12376 Text en © 2016 The Authors. Influenza and Other Respiratory Viruses Published by John Wiley & Sons Ltd. This is an open access article under the terms of the Creative Commons Attribution (http://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Original Articles
Moss, Robert
Zarebski, Alexander
Dawson, Peter
McCaw, James M.
Forecasting influenza outbreak dynamics in Melbourne from Internet search query surveillance data
title Forecasting influenza outbreak dynamics in Melbourne from Internet search query surveillance data
title_full Forecasting influenza outbreak dynamics in Melbourne from Internet search query surveillance data
title_fullStr Forecasting influenza outbreak dynamics in Melbourne from Internet search query surveillance data
title_full_unstemmed Forecasting influenza outbreak dynamics in Melbourne from Internet search query surveillance data
title_short Forecasting influenza outbreak dynamics in Melbourne from Internet search query surveillance data
title_sort forecasting influenza outbreak dynamics in melbourne from internet search query surveillance data
topic Original Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4910172/
https://www.ncbi.nlm.nih.gov/pubmed/26859411
http://dx.doi.org/10.1111/irv.12376
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