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Agent-Based Deterministic Modeling of the Bone Marrow Homeostasis
Modeling of stem cells not only describes but also predicts how a stem cell's environment can control its fate. The first stem cell populations discovered were hematopoietic stem cells (HSCs). In this paper, we present a deterministic model of bone marrow (that hosts HSCs) that is consistent wi...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Hindawi Publishing Corporation
2016
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4910184/ https://www.ncbi.nlm.nih.gov/pubmed/27340402 http://dx.doi.org/10.1155/2016/8054219 |
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author | Kurhekar, Manish Deshpande, Umesh |
author_facet | Kurhekar, Manish Deshpande, Umesh |
author_sort | Kurhekar, Manish |
collection | PubMed |
description | Modeling of stem cells not only describes but also predicts how a stem cell's environment can control its fate. The first stem cell populations discovered were hematopoietic stem cells (HSCs). In this paper, we present a deterministic model of bone marrow (that hosts HSCs) that is consistent with several of the qualitative biological observations. This model incorporates stem cell death (apoptosis) after a certain number of cell divisions and also demonstrates that a single HSC can potentially populate the entire bone marrow. It also demonstrates that there is a production of sufficient number of differentiated cells (RBCs, WBCs, etc.). We prove that our model of bone marrow is biologically consistent and it overcomes the biological feasibility limitations of previously reported models. The major contribution of our model is the flexibility it allows in choosing model parameters which permits several different simulations to be carried out in silico without affecting the homeostatic properties of the model. We have also performed agent-based simulation of the model of bone marrow system proposed in this paper. We have also included parameter details and the results obtained from the simulation. The program of the agent-based simulation of the proposed model is made available on a publicly accessible website. |
format | Online Article Text |
id | pubmed-4910184 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | Hindawi Publishing Corporation |
record_format | MEDLINE/PubMed |
spelling | pubmed-49101842016-06-23 Agent-Based Deterministic Modeling of the Bone Marrow Homeostasis Kurhekar, Manish Deshpande, Umesh Adv Bioinformatics Research Article Modeling of stem cells not only describes but also predicts how a stem cell's environment can control its fate. The first stem cell populations discovered were hematopoietic stem cells (HSCs). In this paper, we present a deterministic model of bone marrow (that hosts HSCs) that is consistent with several of the qualitative biological observations. This model incorporates stem cell death (apoptosis) after a certain number of cell divisions and also demonstrates that a single HSC can potentially populate the entire bone marrow. It also demonstrates that there is a production of sufficient number of differentiated cells (RBCs, WBCs, etc.). We prove that our model of bone marrow is biologically consistent and it overcomes the biological feasibility limitations of previously reported models. The major contribution of our model is the flexibility it allows in choosing model parameters which permits several different simulations to be carried out in silico without affecting the homeostatic properties of the model. We have also performed agent-based simulation of the model of bone marrow system proposed in this paper. We have also included parameter details and the results obtained from the simulation. The program of the agent-based simulation of the proposed model is made available on a publicly accessible website. Hindawi Publishing Corporation 2016 2016-06-02 /pmc/articles/PMC4910184/ /pubmed/27340402 http://dx.doi.org/10.1155/2016/8054219 Text en Copyright © 2016 M. Kurhekar and U. Deshpande. https://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Research Article Kurhekar, Manish Deshpande, Umesh Agent-Based Deterministic Modeling of the Bone Marrow Homeostasis |
title | Agent-Based Deterministic Modeling of the Bone Marrow Homeostasis |
title_full | Agent-Based Deterministic Modeling of the Bone Marrow Homeostasis |
title_fullStr | Agent-Based Deterministic Modeling of the Bone Marrow Homeostasis |
title_full_unstemmed | Agent-Based Deterministic Modeling of the Bone Marrow Homeostasis |
title_short | Agent-Based Deterministic Modeling of the Bone Marrow Homeostasis |
title_sort | agent-based deterministic modeling of the bone marrow homeostasis |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4910184/ https://www.ncbi.nlm.nih.gov/pubmed/27340402 http://dx.doi.org/10.1155/2016/8054219 |
work_keys_str_mv | AT kurhekarmanish agentbaseddeterministicmodelingofthebonemarrowhomeostasis AT deshpandeumesh agentbaseddeterministicmodelingofthebonemarrowhomeostasis |