Cargando…
De Novo Assembly of Human Herpes Virus Type 1 (HHV-1) Genome, Mining of Non-Canonical Structures and Detection of Novel Drug-Resistance Mutations Using Short- and Long-Read Next Generation Sequencing Technologies
Human herpesvirus type 1 (HHV-1) has a large double-stranded DNA genome of approximately 152 kbp that is structurally complex and GC-rich. This makes the assembly of HHV-1 whole genomes from short-read sequencing data technically challenging. To improve the assembly of HHV-1 genomes we have employed...
Autores principales: | Karamitros, Timokratis, Harrison, Ian, Piorkowska, Renata, Katzourakis, Aris, Magiorkinis, Gkikas, Mbisa, Jean Lutamyo |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2016
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4910999/ https://www.ncbi.nlm.nih.gov/pubmed/27309375 http://dx.doi.org/10.1371/journal.pone.0157600 |
Ejemplares similares
-
A novel method for the multiplexed target enrichment of MinION next generation sequencing libraries using PCR-generated baits
por: Karamitros, Timokratis, et al.
Publicado: (2015) -
STEAK: A specific tool for transposable elements and retrovirus detection in high-throughput sequencing data
por: Santander, Cindy G., et al.
Publicado: (2017) -
Interferon-Inducible Protein 16 (IFI16) Has a Broad-Spectrum Binding Ability Against ssDNA Targets: An Evolutionary Hypothesis for Antiretroviral Checkpoint
por: Hurst, Tara Patricia, et al.
Publicado: (2019) -
Impact of Interferon-α Receptor-1 Promoter Polymorphisms on the Transcriptome of the Hepatitis B Virus-Associated Hepatocellular Carcinoma
por: Karamitros, Timokratis, et al.
Publicado: (2018) -
Nanopore sequencing and full genome de novo assembly of human cytomegalovirus TB40/E reveals clonal diversity and structural variations
por: Karamitros, Timokratis, et al.
Publicado: (2018)