Whole-Genome Sequence of Hafnia alvei HUMV-5920, a Human Isolate

A clinical isolate of Hafnia alvei (strain HUMV-5920) was obtained from a urine sample from an adult patient. We report here its complete genome assembly using PacBio single-molecule real-time (SMRT) sequencing, which resulted in a chromosome with 4.5 Mb and a circular contig of 87 kb. About 4,146 p...

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Detalles Bibliográficos
Autores principales: Lázaro-Díez, María, Redondo-Salvo, Santiago, Arboleya-Agudo, Aroa, Ocejo-Vinyals, Javier Gonzalo, Chapartegui-González, Itziar, Ocampo-Sosa, Alain A., Acosta, Felix, Martínez-Martínez, Luis, Ramos-Vivas, José
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Society for Microbiology 2016
Materias:
Prokaryotes
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4911478/
https://www.ncbi.nlm.nih.gov/pubmed/27313299
http://dx.doi.org/10.1128/genomeA.00556-16
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author Lázaro-Díez, María
Redondo-Salvo, Santiago
Arboleya-Agudo, Aroa
Ocejo-Vinyals, Javier Gonzalo
Chapartegui-González, Itziar
Ocampo-Sosa, Alain A.
Acosta, Felix
Martínez-Martínez, Luis
Ramos-Vivas, José
author_facet Lázaro-Díez, María
Redondo-Salvo, Santiago
Arboleya-Agudo, Aroa
Ocejo-Vinyals, Javier Gonzalo
Chapartegui-González, Itziar
Ocampo-Sosa, Alain A.
Acosta, Felix
Martínez-Martínez, Luis
Ramos-Vivas, José
author_sort Lázaro-Díez, María
collection PubMed
description A clinical isolate of Hafnia alvei (strain HUMV-5920) was obtained from a urine sample from an adult patient. We report here its complete genome assembly using PacBio single-molecule real-time (SMRT) sequencing, which resulted in a chromosome with 4.5 Mb and a circular contig of 87 kb. About 4,146 protein-coding genes are predicted from this assembly.
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spelling pubmed-49114782016-06-17 Whole-Genome Sequence of Hafnia alvei HUMV-5920, a Human Isolate Lázaro-Díez, María Redondo-Salvo, Santiago Arboleya-Agudo, Aroa Ocejo-Vinyals, Javier Gonzalo Chapartegui-González, Itziar Ocampo-Sosa, Alain A. Acosta, Felix Martínez-Martínez, Luis Ramos-Vivas, José Genome Announc Prokaryotes A clinical isolate of Hafnia alvei (strain HUMV-5920) was obtained from a urine sample from an adult patient. We report here its complete genome assembly using PacBio single-molecule real-time (SMRT) sequencing, which resulted in a chromosome with 4.5 Mb and a circular contig of 87 kb. About 4,146 protein-coding genes are predicted from this assembly. American Society for Microbiology 2016-06-16 /pmc/articles/PMC4911478/ /pubmed/27313299 http://dx.doi.org/10.1128/genomeA.00556-16 Text en Copyright © 2016 Lázaro-Díez et al. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution 4.0 International license (http://creativecommons.org/licenses/by/4.0/) .
spellingShingle Prokaryotes
Lázaro-Díez, María
Redondo-Salvo, Santiago
Arboleya-Agudo, Aroa
Ocejo-Vinyals, Javier Gonzalo
Chapartegui-González, Itziar
Ocampo-Sosa, Alain A.
Acosta, Felix
Martínez-Martínez, Luis
Ramos-Vivas, José
Whole-Genome Sequence of Hafnia alvei HUMV-5920, a Human Isolate
title Whole-Genome Sequence of Hafnia alvei HUMV-5920, a Human Isolate
title_full Whole-Genome Sequence of Hafnia alvei HUMV-5920, a Human Isolate
title_fullStr Whole-Genome Sequence of Hafnia alvei HUMV-5920, a Human Isolate
title_full_unstemmed Whole-Genome Sequence of Hafnia alvei HUMV-5920, a Human Isolate
title_short Whole-Genome Sequence of Hafnia alvei HUMV-5920, a Human Isolate
title_sort whole-genome sequence of hafnia alvei humv-5920, a human isolate
topic Prokaryotes
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4911478/
https://www.ncbi.nlm.nih.gov/pubmed/27313299
http://dx.doi.org/10.1128/genomeA.00556-16
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