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Lipid Discovery by Combinatorial Screening and Untargeted LC-MS/MS

We present a method for the systematic identification of picogram quantities of new lipids in total extracts of tissues and fluids. It relies on the modularity of lipid structures and applies all-ions fragmentation LC-MS/MS and Arcadiate software to recognize individual modules originating from the...

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Autores principales: Bilgin, Mesut, Born, Petra, Fezza, Filomena, Heimes, Michael, Mastrangelo, Nicolina, Wagner, Nicolai, Schultz, Carsten, Maccarrone, Mauro, Eaton, Suzanne, Nadler, André, Wilm, Matthias, Shevchenko, Andrej
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4911551/
https://www.ncbi.nlm.nih.gov/pubmed/27312775
http://dx.doi.org/10.1038/srep27920
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author Bilgin, Mesut
Born, Petra
Fezza, Filomena
Heimes, Michael
Mastrangelo, Nicolina
Wagner, Nicolai
Schultz, Carsten
Maccarrone, Mauro
Eaton, Suzanne
Nadler, André
Wilm, Matthias
Shevchenko, Andrej
author_facet Bilgin, Mesut
Born, Petra
Fezza, Filomena
Heimes, Michael
Mastrangelo, Nicolina
Wagner, Nicolai
Schultz, Carsten
Maccarrone, Mauro
Eaton, Suzanne
Nadler, André
Wilm, Matthias
Shevchenko, Andrej
author_sort Bilgin, Mesut
collection PubMed
description We present a method for the systematic identification of picogram quantities of new lipids in total extracts of tissues and fluids. It relies on the modularity of lipid structures and applies all-ions fragmentation LC-MS/MS and Arcadiate software to recognize individual modules originating from the same lipid precursor of known or assumed structure. In this way it alleviates the need to recognize and fragment very low abundant precursors of novel molecules in complex lipid extracts. In a single analysis of rat kidney extract the method identified 58 known and discovered 74 novel endogenous endocannabinoids and endocannabinoid-related molecules, including a novel class of N-acylaspartates that inhibit Hedgehog signaling while having no impact on endocannabinoid receptors.
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spelling pubmed-49115512016-06-17 Lipid Discovery by Combinatorial Screening and Untargeted LC-MS/MS Bilgin, Mesut Born, Petra Fezza, Filomena Heimes, Michael Mastrangelo, Nicolina Wagner, Nicolai Schultz, Carsten Maccarrone, Mauro Eaton, Suzanne Nadler, André Wilm, Matthias Shevchenko, Andrej Sci Rep Article We present a method for the systematic identification of picogram quantities of new lipids in total extracts of tissues and fluids. It relies on the modularity of lipid structures and applies all-ions fragmentation LC-MS/MS and Arcadiate software to recognize individual modules originating from the same lipid precursor of known or assumed structure. In this way it alleviates the need to recognize and fragment very low abundant precursors of novel molecules in complex lipid extracts. In a single analysis of rat kidney extract the method identified 58 known and discovered 74 novel endogenous endocannabinoids and endocannabinoid-related molecules, including a novel class of N-acylaspartates that inhibit Hedgehog signaling while having no impact on endocannabinoid receptors. Nature Publishing Group 2016-06-17 /pmc/articles/PMC4911551/ /pubmed/27312775 http://dx.doi.org/10.1038/srep27920 Text en Copyright © 2016, Macmillan Publishers Limited http://creativecommons.org/licenses/by/4.0/ This work is licensed under a Creative Commons Attribution 4.0 International License. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in the credit line; if the material is not included under the Creative Commons license, users will need to obtain permission from the license holder to reproduce the material. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/
spellingShingle Article
Bilgin, Mesut
Born, Petra
Fezza, Filomena
Heimes, Michael
Mastrangelo, Nicolina
Wagner, Nicolai
Schultz, Carsten
Maccarrone, Mauro
Eaton, Suzanne
Nadler, André
Wilm, Matthias
Shevchenko, Andrej
Lipid Discovery by Combinatorial Screening and Untargeted LC-MS/MS
title Lipid Discovery by Combinatorial Screening and Untargeted LC-MS/MS
title_full Lipid Discovery by Combinatorial Screening and Untargeted LC-MS/MS
title_fullStr Lipid Discovery by Combinatorial Screening and Untargeted LC-MS/MS
title_full_unstemmed Lipid Discovery by Combinatorial Screening and Untargeted LC-MS/MS
title_short Lipid Discovery by Combinatorial Screening and Untargeted LC-MS/MS
title_sort lipid discovery by combinatorial screening and untargeted lc-ms/ms
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4911551/
https://www.ncbi.nlm.nih.gov/pubmed/27312775
http://dx.doi.org/10.1038/srep27920
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