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Lipid Discovery by Combinatorial Screening and Untargeted LC-MS/MS
We present a method for the systematic identification of picogram quantities of new lipids in total extracts of tissues and fluids. It relies on the modularity of lipid structures and applies all-ions fragmentation LC-MS/MS and Arcadiate software to recognize individual modules originating from the...
Autores principales: | , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group
2016
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4911551/ https://www.ncbi.nlm.nih.gov/pubmed/27312775 http://dx.doi.org/10.1038/srep27920 |
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author | Bilgin, Mesut Born, Petra Fezza, Filomena Heimes, Michael Mastrangelo, Nicolina Wagner, Nicolai Schultz, Carsten Maccarrone, Mauro Eaton, Suzanne Nadler, André Wilm, Matthias Shevchenko, Andrej |
author_facet | Bilgin, Mesut Born, Petra Fezza, Filomena Heimes, Michael Mastrangelo, Nicolina Wagner, Nicolai Schultz, Carsten Maccarrone, Mauro Eaton, Suzanne Nadler, André Wilm, Matthias Shevchenko, Andrej |
author_sort | Bilgin, Mesut |
collection | PubMed |
description | We present a method for the systematic identification of picogram quantities of new lipids in total extracts of tissues and fluids. It relies on the modularity of lipid structures and applies all-ions fragmentation LC-MS/MS and Arcadiate software to recognize individual modules originating from the same lipid precursor of known or assumed structure. In this way it alleviates the need to recognize and fragment very low abundant precursors of novel molecules in complex lipid extracts. In a single analysis of rat kidney extract the method identified 58 known and discovered 74 novel endogenous endocannabinoids and endocannabinoid-related molecules, including a novel class of N-acylaspartates that inhibit Hedgehog signaling while having no impact on endocannabinoid receptors. |
format | Online Article Text |
id | pubmed-4911551 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | Nature Publishing Group |
record_format | MEDLINE/PubMed |
spelling | pubmed-49115512016-06-17 Lipid Discovery by Combinatorial Screening and Untargeted LC-MS/MS Bilgin, Mesut Born, Petra Fezza, Filomena Heimes, Michael Mastrangelo, Nicolina Wagner, Nicolai Schultz, Carsten Maccarrone, Mauro Eaton, Suzanne Nadler, André Wilm, Matthias Shevchenko, Andrej Sci Rep Article We present a method for the systematic identification of picogram quantities of new lipids in total extracts of tissues and fluids. It relies on the modularity of lipid structures and applies all-ions fragmentation LC-MS/MS and Arcadiate software to recognize individual modules originating from the same lipid precursor of known or assumed structure. In this way it alleviates the need to recognize and fragment very low abundant precursors of novel molecules in complex lipid extracts. In a single analysis of rat kidney extract the method identified 58 known and discovered 74 novel endogenous endocannabinoids and endocannabinoid-related molecules, including a novel class of N-acylaspartates that inhibit Hedgehog signaling while having no impact on endocannabinoid receptors. Nature Publishing Group 2016-06-17 /pmc/articles/PMC4911551/ /pubmed/27312775 http://dx.doi.org/10.1038/srep27920 Text en Copyright © 2016, Macmillan Publishers Limited http://creativecommons.org/licenses/by/4.0/ This work is licensed under a Creative Commons Attribution 4.0 International License. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in the credit line; if the material is not included under the Creative Commons license, users will need to obtain permission from the license holder to reproduce the material. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ |
spellingShingle | Article Bilgin, Mesut Born, Petra Fezza, Filomena Heimes, Michael Mastrangelo, Nicolina Wagner, Nicolai Schultz, Carsten Maccarrone, Mauro Eaton, Suzanne Nadler, André Wilm, Matthias Shevchenko, Andrej Lipid Discovery by Combinatorial Screening and Untargeted LC-MS/MS |
title | Lipid Discovery by Combinatorial Screening and Untargeted LC-MS/MS |
title_full | Lipid Discovery by Combinatorial Screening and Untargeted LC-MS/MS |
title_fullStr | Lipid Discovery by Combinatorial Screening and Untargeted LC-MS/MS |
title_full_unstemmed | Lipid Discovery by Combinatorial Screening and Untargeted LC-MS/MS |
title_short | Lipid Discovery by Combinatorial Screening and Untargeted LC-MS/MS |
title_sort | lipid discovery by combinatorial screening and untargeted lc-ms/ms |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4911551/ https://www.ncbi.nlm.nih.gov/pubmed/27312775 http://dx.doi.org/10.1038/srep27920 |
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