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Systematic Analysis of Integrated Gene Functional Network of Four Chronic Stress-related Lifestyle Disorders

BACKGROUND: Stress is a term used to define factors involved in changes in the physiological balances resulting in disease conditions. Chronic exposure to stress conditions in modern lifestyles has resulted in a group of disorders called lifestyle disorders. Genetic background and environmental fact...

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Autores principales: Roy, Souvick, Chakraborty, Abhik, Ghosh, Chinmoy, Banerjee, Birendranath
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Medknow Publications & Media Pvt Ltd 2015
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4911901/
https://www.ncbi.nlm.nih.gov/pubmed/27330735
http://dx.doi.org/10.4103/2041-9414.155952
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author Roy, Souvick
Chakraborty, Abhik
Ghosh, Chinmoy
Banerjee, Birendranath
author_facet Roy, Souvick
Chakraborty, Abhik
Ghosh, Chinmoy
Banerjee, Birendranath
author_sort Roy, Souvick
collection PubMed
description BACKGROUND: Stress is a term used to define factors involved in changes in the physiological balances resulting in disease conditions. Chronic exposure to stress conditions in modern lifestyles has resulted in a group of disorders called lifestyle disorders. Genetic background and environmental factors are interrelated to lifestyle in determining the health status of individuals. Hence, identification of disease-associated genes is the primary step toward explanations of pathogenesis of these diseases. In functional genomics, large-scale molecular and physiological data are used for the identification of causative genes associated with a disease. AIM: The objective of our study was to find a common set of genes involved in chronic stress-related lifestyle diseases such as cardiovascular diseases (CVDs), type 2 diabetes (T2D), hypertension (HTN), and obesity. MATERIALS AND METHODS: In our study, we have performed a systematic analysis of the functional gene network of four chronic stress-related lifestyle diseases by retrieving genes from published databases. We have tried to systematically construct a functional protein-protein interaction (PPI) network. The goals of establishing this network were the functional enrichment study of interacting partners as well as functional disease ontology annotation (FunDO) of the enriched genes. RESULTS: This study enabled the identification of key genes involved in these stress-related lifestyle diseases by prioritizing candidate genes based on their degree of involvement. In this systematic analysis, we have found key genes for these diseases based on their involvement and association at the gene network level and PPI. CONCLUSION: We have deciphered a group of genes that in combination play a crucial role and may impact the function of the whole genome in the four lifestyle disorders mentioned.
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spelling pubmed-49119012016-06-17 Systematic Analysis of Integrated Gene Functional Network of Four Chronic Stress-related Lifestyle Disorders Roy, Souvick Chakraborty, Abhik Ghosh, Chinmoy Banerjee, Birendranath Genome Integr Original Article BACKGROUND: Stress is a term used to define factors involved in changes in the physiological balances resulting in disease conditions. Chronic exposure to stress conditions in modern lifestyles has resulted in a group of disorders called lifestyle disorders. Genetic background and environmental factors are interrelated to lifestyle in determining the health status of individuals. Hence, identification of disease-associated genes is the primary step toward explanations of pathogenesis of these diseases. In functional genomics, large-scale molecular and physiological data are used for the identification of causative genes associated with a disease. AIM: The objective of our study was to find a common set of genes involved in chronic stress-related lifestyle diseases such as cardiovascular diseases (CVDs), type 2 diabetes (T2D), hypertension (HTN), and obesity. MATERIALS AND METHODS: In our study, we have performed a systematic analysis of the functional gene network of four chronic stress-related lifestyle diseases by retrieving genes from published databases. We have tried to systematically construct a functional protein-protein interaction (PPI) network. The goals of establishing this network were the functional enrichment study of interacting partners as well as functional disease ontology annotation (FunDO) of the enriched genes. RESULTS: This study enabled the identification of key genes involved in these stress-related lifestyle diseases by prioritizing candidate genes based on their degree of involvement. In this systematic analysis, we have found key genes for these diseases based on their involvement and association at the gene network level and PPI. CONCLUSION: We have deciphered a group of genes that in combination play a crucial role and may impact the function of the whole genome in the four lifestyle disorders mentioned. Medknow Publications & Media Pvt Ltd 2015-04-28 /pmc/articles/PMC4911901/ /pubmed/27330735 http://dx.doi.org/10.4103/2041-9414.155952 Text en Copyright: © 2015 Genome Integrity http://creativecommons.org/licenses/by-nc-sa/3.0 This is an open access article distributed under the terms of the Creative Commons Attribution-NonCommercial-ShareAlike 3.0 License, which allows others to remix, tweak, and build upon the work non-commercially, as long as the author is credited and the new creations are licensed under the identical terms.
spellingShingle Original Article
Roy, Souvick
Chakraborty, Abhik
Ghosh, Chinmoy
Banerjee, Birendranath
Systematic Analysis of Integrated Gene Functional Network of Four Chronic Stress-related Lifestyle Disorders
title Systematic Analysis of Integrated Gene Functional Network of Four Chronic Stress-related Lifestyle Disorders
title_full Systematic Analysis of Integrated Gene Functional Network of Four Chronic Stress-related Lifestyle Disorders
title_fullStr Systematic Analysis of Integrated Gene Functional Network of Four Chronic Stress-related Lifestyle Disorders
title_full_unstemmed Systematic Analysis of Integrated Gene Functional Network of Four Chronic Stress-related Lifestyle Disorders
title_short Systematic Analysis of Integrated Gene Functional Network of Four Chronic Stress-related Lifestyle Disorders
title_sort systematic analysis of integrated gene functional network of four chronic stress-related lifestyle disorders
topic Original Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4911901/
https://www.ncbi.nlm.nih.gov/pubmed/27330735
http://dx.doi.org/10.4103/2041-9414.155952
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