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Proposed nomenclature for microhaplotypes

Microhaplotypes are a new type of genetic marker in forensics and population genetics. A standardized nomenclature is desirable. A simple approach that does not require a central authority for approval is proposed. The nomenclature proposed follows the recommendation of the HUGO Gene Nomenclature Co...

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Autor principal: Kidd, Kenneth K.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4912715/
https://www.ncbi.nlm.nih.gov/pubmed/27316555
http://dx.doi.org/10.1186/s40246-016-0078-y
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author Kidd, Kenneth K.
author_facet Kidd, Kenneth K.
author_sort Kidd, Kenneth K.
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description Microhaplotypes are a new type of genetic marker in forensics and population genetics. A standardized nomenclature is desirable. A simple approach that does not require a central authority for approval is proposed. The nomenclature proposed follows the recommendation of the HUGO Gene Nomenclature Committee (http://www.genenames.org): “We strongly encourage naming families and groups of genes related by sequence and/or function using a “root” symbol. This is an efficient and informative way to name related genes, and already works well for a number of established gene families…” The proposal involves a simple root consisting of “mh” followed by the two-digit chromosome number and unique characters established by the authors in the initial publication. We suggest the unique symbol be an indication of the laboratory followed by characters unique to the chromosome and laboratory. For instance, the microhaplotype symbol mh01KK-001 refers to a locus on chromosome 1 published by the Kidd Lab (KK-) as their #001. Publication defines mh01KK-001 as comprised of four single nucleotide polymorphisms (SNPs), rs4648344, rs6663840, rs58111155, and rs6688969. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1186/s40246-016-0078-y) contains supplementary material, which is available to authorized users.
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spelling pubmed-49127152016-06-19 Proposed nomenclature for microhaplotypes Kidd, Kenneth K. Hum Genomics Opinion Article Microhaplotypes are a new type of genetic marker in forensics and population genetics. A standardized nomenclature is desirable. A simple approach that does not require a central authority for approval is proposed. The nomenclature proposed follows the recommendation of the HUGO Gene Nomenclature Committee (http://www.genenames.org): “We strongly encourage naming families and groups of genes related by sequence and/or function using a “root” symbol. This is an efficient and informative way to name related genes, and already works well for a number of established gene families…” The proposal involves a simple root consisting of “mh” followed by the two-digit chromosome number and unique characters established by the authors in the initial publication. We suggest the unique symbol be an indication of the laboratory followed by characters unique to the chromosome and laboratory. For instance, the microhaplotype symbol mh01KK-001 refers to a locus on chromosome 1 published by the Kidd Lab (KK-) as their #001. Publication defines mh01KK-001 as comprised of four single nucleotide polymorphisms (SNPs), rs4648344, rs6663840, rs58111155, and rs6688969. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1186/s40246-016-0078-y) contains supplementary material, which is available to authorized users. BioMed Central 2016-06-17 /pmc/articles/PMC4912715/ /pubmed/27316555 http://dx.doi.org/10.1186/s40246-016-0078-y Text en © The Author(s). 2016 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.
spellingShingle Opinion Article
Kidd, Kenneth K.
Proposed nomenclature for microhaplotypes
title Proposed nomenclature for microhaplotypes
title_full Proposed nomenclature for microhaplotypes
title_fullStr Proposed nomenclature for microhaplotypes
title_full_unstemmed Proposed nomenclature for microhaplotypes
title_short Proposed nomenclature for microhaplotypes
title_sort proposed nomenclature for microhaplotypes
topic Opinion Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4912715/
https://www.ncbi.nlm.nih.gov/pubmed/27316555
http://dx.doi.org/10.1186/s40246-016-0078-y
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