Cargando…

Identification of Cancer Related Genes Using a Comprehensive Map of Human Gene Expression

Rapid accumulation and availability of gene expression datasets in public repositories have enabled large-scale meta-analyses of combined data. The richness of cross-experiment data has provided new biological insights, including identification of new cancer genes. In this study, we compiled a human...

Descripción completa

Detalles Bibliográficos
Autores principales:	Torrente, Aurora, Lukk, Margus, Xue, Vincent, Parkinson, Helen, Rung, Johan, Brazma, Alvis
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Public Library of Science 2016
Materias:	Research Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4913919/ https://www.ncbi.nlm.nih.gov/pubmed/27322383 http://dx.doi.org/10.1371/journal.pone.0157484

Ejemplares similares

MageComet—web application for harmonizing existing large-scale experiment descriptions
por: Xue, Vincent, et al.
Publicado: (2012)

Large scale comparison of global gene expression patterns in human and mouse
por: Zheng-Bradley, Xiangqun, et al.
Publicado: (2010)

Importing ArrayExpress datasets into R/Bioconductor
por: Kauffmann, Audrey, et al.
Publicado: (2009)

A fully scalable online pre-processing algorithm for short oligonucleotide microarray atlases
por: Lahti, Leo, et al.
Publicado: (2013)

clustComp, a bioconductor package for the comparison of clustering results
por: Torrente, Aurora, et al.
Publicado: (2017)

Transcriptome analysis of human tissues and cell lines reveals one dominant transcript per gene
por: Gonzàlez-Porta, Mar, et al.
Publicado: (2013)

A novel atlas of gene expression in human skeletal muscle reveals molecular changes associated with aging
por: Su, Jing, et al.
Publicado: (2015)

Gene Expression Atlas at the European Bioinformatics Institute
por: Kapushesky, Misha, et al.
Publicado: (2010)

Learning About Gene Regulatory Networks From Gene Deletion Experiments
por: Schlitt, Thomas, et al.
Publicado: (2002)

Current approaches to gene regulatory network modelling
por: Schlitt, Thomas, et al.
Publicado: (2007)

Visualization of large microarray experiments with space maps
por: Gehlenborg, Nils, et al.
Publicado: (2009)

Prediction of Gene Expression in Embryonic Structures of Drosophila melanogaster
por: Samsonova, Anastasia A, et al.
Publicado: (2007)

Towards reconstruction of gene networks from expression data by supervised learning
por: Soinov, Lev A, et al.
Publicado: (2003)

Global Gene Expression Profiling Reveals SPINK1 as a Potential Hepatocellular Carcinoma Marker
por: Marshall, Aileen, et al.
Publicado: (2013)

Contributions of transcription and mRNA decay to gene expression dynamics of fission yeast in response to oxidative stress
por: Marguerat, Samuel, et al.
Publicado: (2014)

ArrayExpress update—an archive of microarray and high-throughput sequencing-based functional genomics experiments
por: Parkinson, Helen, et al.
Publicado: (2011)

ArrayExpress—a public database of microarray experiments and gene expression profiles
por: Parkinson, H., et al.
Publicado: (2007)

Tandem RNA Chimeras Contribute to Transcriptome Diversity in Human Population and Are Associated with Intronic Genetic Variants
por: Greger, Liliana, et al.
Publicado: (2014)

ArrayExpress update—from an archive of functional genomics experiments to the atlas of gene expression
por: Parkinson, Helen, et al.
Publicado: (2009)

RNA-Seq Gene Profiling - A Systematic Empirical Comparison
por: Fonseca, Nuno A., et al.
Publicado: (2014)

Assessing affymetrix GeneChip microarray quality
por: McCall, Matthew N, et al.
Publicado: (2011)

Band-based similarity indices for gene expression classification and clustering
por: Torrente, Aurora
Publicado: (2021)

Minimum Information About a Microarray Experiment (MIAME) – Successes, Failures, Challenges
por: Brazma, Alvis
Publicado: (2009)

The BioSample Database (BioSD) at the European Bioinformatics Institute
por: Gostev, Mikhail, et al.
Publicado: (2012)

Dynamics of gene regulatory networks and their dependence on network topology and quantitative parameters – the case of phage λ
por: Ruklisa, Dace, et al.
Publicado: (2019)

Extensive compensatory cis-trans regulation in the evolution of mouse gene expression
por: Goncalves, Angela, et al.
Publicado: (2012)

Expression Atlas update—an integrated database of gene and protein expression in humans, animals and plants
por: Petryszak, Robert, et al.
Publicado: (2016)

Crisflash: open-source software to generate CRISPR guide RNAs against genomes annotated with individual variation
por: Jacquin, Adrien L S, et al.
Publicado: (2019)

MAGETabulator, a suite of tools to support the microarray data format MAGE-TAB
por: Rayner, Tim F., et al.
Publicado: (2009)

SAIL—a software system for sample and phenotype availability across biobanks and cohorts
por: Gostev, Mikhail, et al.
Publicado: (2011)

Modeling sample variables with an Experimental Factor Ontology
por: Malone, James, et al.
Publicado: (2010)

Updates to BioSamples database at European Bioinformatics Institute
por: Faulconbridge, Adam, et al.
Publicado: (2014)

DepthTools: an R package for a robust analysis of gene expression data
por: Torrente, Aurora, et al.
Publicado: (2013)

Expression Atlas update—a database of gene and transcript expression from microarray- and sequencing-based functional genomics experiments
por: Petryszak, Robert, et al.
Publicado: (2014)

Gene Expression Atlas update—a value-added database of microarray and sequencing-based functional genomics experiments
por: Kapushesky, Misha, et al.
Publicado: (2012)

Comprehensive mapping of the human cytokine gene regulatory network
por: Santoso, Clarissa S, et al.
Publicado: (2020)

Comprehensive analysis of gene expression patterns of hedgehog-related genes
por: Hao, Limin, et al.
Publicado: (2006)

The BioStudies database
por: McEntyre, Jo, et al.
Publicado: (2015)

Improving GENCODE reference gene annotation using a high-stringency proteogenomics workflow
por: Wright, James C., et al.
Publicado: (2016)

The Phaseolus vulgaris ZIP gene family: identification, characterization, mapping, and gene expression
por: Astudillo, Carolina, et al.
Publicado: (2013)

Cannot write session to /tmp/vufind_sessions/sess_l3ss5rkpu0cdkg3uecadhl9u3q