Cargando…

Development of an accurate kinetic model for the central carbon metabolism of Escherichia coli

BACKGROUND: A kinetic model provides insights into the dynamic response of biological systems and predicts how their complex metabolic and gene regulatory networks generate particular functions. Of many biological systems, Escherichia coli metabolic pathways have been modeled extensively at the enzy...

Descripción completa

Detalles Bibliográficos
Autores principales:	Jahan, Nusrat, Maeda, Kazuhiro, Matsuoka, Yu, Sugimoto, Yurie, Kurata, Hiroyuki
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	BioMed Central 2016
Materias:	Research
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4915146/ https://www.ncbi.nlm.nih.gov/pubmed/27329289 http://dx.doi.org/10.1186/s12934-016-0511-x

Ejemplares similares

Modeling and simulation of the redox regulation of the metabolism in Escherichia coli at different oxygen concentrations
por: Matsuoka, Yu, et al.
Publicado: (2017)

A kinetic model of the central carbon metabolism for acrylic acid production in Escherichia coli
por: Oliveira, Alexandre, et al.
Publicado: (2021)

Phenotypic bistability in Escherichia coli's central carbon metabolism
por: Kotte, Oliver, et al.
Publicado: (2014)

Robustness analysis of the detailed kinetic model of an ErbB signaling network by using dynamic sensitivity
por: Masunaga, Hiroyuki, et al.
Publicado: (2017)

Computer-Aided Rational Design of Efficient NADPH Production System by Escherichia coli pgi Mutant Using a Mixture of Glucose and Xylose
por: Matsuoka, Yu, et al.
Publicado: (2020)

Automatic Generation of SBML Kinetic Models from Natural Language Texts Using GPT
por: Maeda, Kazuhiro, et al.
Publicado: (2023)

Targeted optimization of central carbon metabolism for engineering succinate production in Escherichia coli
por: Zhao, Ying, et al.
Publicado: (2016)

A systematic investigation of Escherichia coli central carbon metabolism in response to superoxide stress
por: Rui, Bin, et al.
Publicado: (2010)

The Role of Metabolites in the Link between DNA Replication and Central Carbon Metabolism in Escherichia coli
por: Krause, Klaudyna, et al.
Publicado: (2020)

Genetic response to metabolic fluctuations: correlation between central carbon metabolism and DNA replication in Escherichia coli
por: Maciąg, Monika, et al.
Publicado: (2011)

(13)C-Metabolic Flux Analysis Reveals Effect of Phenol on Central Carbon Metabolism in Escherichia coli
por: Kitamura, Sayaka, et al.
Publicado: (2019)

Accelerated Electro-Fermentation of Acetoin in Escherichia coli by Identifying Physiological Limitations of the Electron Transfer Kinetics and the Central Metabolism
por: Beblawy, Sebastian, et al.
Publicado: (2020)

Reliable Metabolic Flux Estimation in Escherichia coli Central Carbon Metabolism Using Intracellular Free Amino Acids
por: Okahashi, Nobuyuki, et al.
Publicado: (2014)

A kinetic platform for in silico modeling of the metabolic dynamics in Escherichia coli
por: Barve, Aditya, et al.
Publicado: (2010)

Characterizing criticality of proteins by systems dynamics: Escherichia coli central carbon metabolism as a working example
por: Li, Ru-Dong, et al.
Publicado: (2012)

Enhancing β-Carotene Production in Escherichia coli by Perturbing Central Carbon Metabolism and Improving the NADPH Supply
por: Wu, Yuanqing, et al.
Publicado: (2020)

MLAGO: machine learning-aided global optimization for Michaelis constant estimation of kinetic modeling
por: Maeda, Kazuhiro, et al.
Publicado: (2022)

New indicator Escherichia coli strain for rapid and accurate detection of supF mutations
por: Fukushima, Ruriko, et al.
Publicado: (2020)

Systematic phenome analysis of Escherichia coli multiple-knockout mutants reveals hidden reactions in central carbon metabolism
por: Nakahigashi, Kenji, et al.
Publicado: (2009)

Importance of understanding the main metabolic regulation in response to the specific pathway mutation for metabolic engineering of Escherichia coli
por: Matsuoka, Yu, et al.
Publicado: (2013)

Systematic mapping of protein‐metabolite interactions in central metabolism of Escherichia coli
por: Diether, Maren, et al.
Publicado: (2019)

Accurate differentiation of Escherichia coli and Shigella serogroups: challenges and strategies
por: Devanga Ragupathi, N.K., et al.
Publicado: (2017)

Changes in the Carbon Metabolism of Escherichia coli During the Evolution of Doxycycline Resistance
por: Yang, Yiwen, et al.
Publicado: (2019)

Ranking network mechanisms by how they fit diverse experiments and deciding on E. coli's ammonium transport and assimilation network
por: Maeda, Kazuhiro, et al.
Publicado: (2019)

Investigating the effects of perturbations to pgi and eno gene expression on central carbon metabolism in Escherichia coli using (13) C metabolic flux analysis
por: Usui, Yuki, et al.
Publicado: (2012)

Computer-aided rational design of the phosphotransferase system for enhanced glucose uptake in Escherichia coli
por: Nishio, Yousuke, et al.
Publicado: (2008)

Shift in Phenotypic Characteristics of Enterotoxigenic Escherichia coli (ETEC) Isolated from Diarrheal Patients in Bangladesh
por: Begum, Yasmin Ara, et al.
Publicado: (2014)

Transcription Analysis of Central Metabolism Genes in Escherichia coli. Possible Roles of σ(38) in Their Expression, as a Response to Carbon Limitation
por: Olvera, Leticia, et al.
Publicado: (2009)

Consequences of phosphoenolpyruvate:sugar phosphotranferase system and pyruvate kinase isozymes inactivation in central carbon metabolism flux distribution in Escherichia coli
por: Meza, Eugenio, et al.
Publicado: (2012)

Comprehensive analysis of central carbon metabolism illuminates connections between nutrient availability, growth rate, and cell morphology in Escherichia coli
por: Westfall, Corey S., et al.
Publicado: (2018)

A Moonlighting Enzyme Links Escherichia coli Cell Size with Central Metabolism
por: Hill, Norbert S., et al.
Publicado: (2013)

Systematic engineering of the central metabolism in Escherichia coli for effective production of n-butanol
por: Saini, Mukesh, et al.
Publicado: (2016)

Few regulatory metabolites coordinate expression of central metabolic genes in Escherichia coli
por: Kochanowski, Karl, et al.
Publicado: (2017)

Central metabolic pathway modification to improve L-tryptophan production in Escherichia coli
por: Du, Lihong, et al.
Publicado: (2019)

Corrigendum: Changes in the Carbon Metabolism of Escherichia coli During the Evolution of Doxycycline Resistance
por: Yang, Yiwen, et al.
Publicado: (2022)

Fluorometric determination of ethidium bromide efflux kinetics in Escherichia coli
por: Paixão, Laura, et al.
Publicado: (2009)

Antibacterial Activity and Kinetics of Litsea cubeba Oil on Escherichia coli
por: Li, Wen-Ru, et al.
Publicado: (2014)

New insights into Escherichia coli metabolism: carbon scavenging, acetate metabolism and carbon recycling responses during growth on glycerol
por: Martínez-Gómez, Karla, et al.
Publicado: (2012)

Kinetic Modeling of Saccharomyces cerevisiae Central Carbon Metabolism: Achievements, Limitations, and Opportunities
por: Lao-Martil, David, et al.
Publicado: (2022)

Investigation of useful carbon tracers for (13)C-metabolic flux analysis of Escherichia coli by considering five experimentally determined flux distributions
por: Maeda, Kousuke, et al.
Publicado: (2016)

Cannot write session to /tmp/vufind_sessions/sess_gn68tr0ks844eohom70sgfhe11