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From GWAS to function: lessons from blood cells

Haematopoiesis, or the process of formation of mature blood cells from committed progenitors, represents an accessible and well‐studied paradigm of cell differentiation and lineage specification. Genetic association studies provide a powerful approach to discover new genes, biological pathways and m...

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Autores principales: Vasquez, L. J., Mann, A. L., Chen, L., Soranzo, N.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2015
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4916502/
https://www.ncbi.nlm.nih.gov/pubmed/27347004
http://dx.doi.org/10.1111/voxs.12217
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author Vasquez, L. J.
Mann, A. L.
Chen, L.
Soranzo, N.
author_facet Vasquez, L. J.
Mann, A. L.
Chen, L.
Soranzo, N.
author_sort Vasquez, L. J.
collection PubMed
description Haematopoiesis, or the process of formation of mature blood cells from committed progenitors, represents an accessible and well‐studied paradigm of cell differentiation and lineage specification. Genetic association studies provide a powerful approach to discover new genes, biological pathways and mechanisms underlying haematopoietic development. Here, we highlight recent findings of genomewide association studies (GWAS) linking 145 genomic loci to traits affecting the formation of red and white cells and platelets in European and other ancestries. We present strategies to address the main challenges in GWAS discoveries, particularly to find functional and regulatory effects of genetic variants, and to identify genes through which these genetic variants affect haematological phenotypes. We argue that studies of haematological trait variation provide an ideal paradigm for understanding the function of GWAS‐associated variants owing to the accessible nature of cells, simple cellular phenotype and focused efforts to characterize the genetic and epigenetic factors influencing the regulatory landscape in highly pure mature cell populations.
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spelling pubmed-49165022016-06-22 From GWAS to function: lessons from blood cells Vasquez, L. J. Mann, A. L. Chen, L. Soranzo, N. ISBT Sci Ser 25th Regional Congress of the International Society of Blood Transfusion London, United Kingdom June 27 – July 1, 2015 Haematopoiesis, or the process of formation of mature blood cells from committed progenitors, represents an accessible and well‐studied paradigm of cell differentiation and lineage specification. Genetic association studies provide a powerful approach to discover new genes, biological pathways and mechanisms underlying haematopoietic development. Here, we highlight recent findings of genomewide association studies (GWAS) linking 145 genomic loci to traits affecting the formation of red and white cells and platelets in European and other ancestries. We present strategies to address the main challenges in GWAS discoveries, particularly to find functional and regulatory effects of genetic variants, and to identify genes through which these genetic variants affect haematological phenotypes. We argue that studies of haematological trait variation provide an ideal paradigm for understanding the function of GWAS‐associated variants owing to the accessible nature of cells, simple cellular phenotype and focused efforts to characterize the genetic and epigenetic factors influencing the regulatory landscape in highly pure mature cell populations. John Wiley and Sons Inc. 2015-10-07 2016-01 /pmc/articles/PMC4916502/ /pubmed/27347004 http://dx.doi.org/10.1111/voxs.12217 Text en © 2015 The Authors ISBT Science Series published by John Wiley & Sons Ltd on behalf of International Society of Blood Transfusion This is an open access article under the terms of the Creative Commons Attribution (http://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle 25th Regional Congress of the International Society of Blood Transfusion London, United Kingdom June 27 – July 1, 2015
Vasquez, L. J.
Mann, A. L.
Chen, L.
Soranzo, N.
From GWAS to function: lessons from blood cells
title From GWAS to function: lessons from blood cells
title_full From GWAS to function: lessons from blood cells
title_fullStr From GWAS to function: lessons from blood cells
title_full_unstemmed From GWAS to function: lessons from blood cells
title_short From GWAS to function: lessons from blood cells
title_sort from gwas to function: lessons from blood cells
topic 25th Regional Congress of the International Society of Blood Transfusion London, United Kingdom June 27 – July 1, 2015
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4916502/
https://www.ncbi.nlm.nih.gov/pubmed/27347004
http://dx.doi.org/10.1111/voxs.12217
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