Cargando…
Genome sequence of the organohalide-respiring Dehalogenimonas alkenigignens type strain (IP3-3(T))
Dehalogenimonas alkenigignens IP3-3(T) is a strictly anaerobic, mesophilic, Gram negative staining bacterium that grows by organohalide respiration, coupling the oxidation of H(2) to the reductive dehalogenation of polychlorinated alkanes. Growth has not been observed with any non-polyhalogenated al...
Autores principales: | , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2016
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4918011/ https://www.ncbi.nlm.nih.gov/pubmed/27340512 http://dx.doi.org/10.1186/s40793-016-0165-7 |
_version_ | 1782439042960326656 |
---|---|
author | Key, Trent A. Richmond, Dray P. Bowman, Kimberly S. Cho, Yong-Joon Chun, Jongsik da Costa, Milton S. Rainey, Fred A. Moe, William M. |
author_facet | Key, Trent A. Richmond, Dray P. Bowman, Kimberly S. Cho, Yong-Joon Chun, Jongsik da Costa, Milton S. Rainey, Fred A. Moe, William M. |
author_sort | Key, Trent A. |
collection | PubMed |
description | Dehalogenimonas alkenigignens IP3-3(T) is a strictly anaerobic, mesophilic, Gram negative staining bacterium that grows by organohalide respiration, coupling the oxidation of H(2) to the reductive dehalogenation of polychlorinated alkanes. Growth has not been observed with any non-polyhalogenated alkane electron acceptors. Here we describe the features of strain IP3-3(T) together with genome sequence information and its annotation. The 1,849,792 bp high-quality-draft genome contains 1936 predicted protein coding genes, 47 tRNA genes, a single large subunit rRNA (23S-5S) locus, and a single, orphan, small unit rRNA (16S) locus. The genome contains 29 predicted reductive dehalogenase genes, a large majority of which lack cognate genes encoding membrane anchoring proteins. |
format | Online Article Text |
id | pubmed-4918011 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-49180112016-06-24 Genome sequence of the organohalide-respiring Dehalogenimonas alkenigignens type strain (IP3-3(T)) Key, Trent A. Richmond, Dray P. Bowman, Kimberly S. Cho, Yong-Joon Chun, Jongsik da Costa, Milton S. Rainey, Fred A. Moe, William M. Stand Genomic Sci Short Genome Report Dehalogenimonas alkenigignens IP3-3(T) is a strictly anaerobic, mesophilic, Gram negative staining bacterium that grows by organohalide respiration, coupling the oxidation of H(2) to the reductive dehalogenation of polychlorinated alkanes. Growth has not been observed with any non-polyhalogenated alkane electron acceptors. Here we describe the features of strain IP3-3(T) together with genome sequence information and its annotation. The 1,849,792 bp high-quality-draft genome contains 1936 predicted protein coding genes, 47 tRNA genes, a single large subunit rRNA (23S-5S) locus, and a single, orphan, small unit rRNA (16S) locus. The genome contains 29 predicted reductive dehalogenase genes, a large majority of which lack cognate genes encoding membrane anchoring proteins. BioMed Central 2016-06-23 /pmc/articles/PMC4918011/ /pubmed/27340512 http://dx.doi.org/10.1186/s40793-016-0165-7 Text en © The Author(s). 2016 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated. |
spellingShingle | Short Genome Report Key, Trent A. Richmond, Dray P. Bowman, Kimberly S. Cho, Yong-Joon Chun, Jongsik da Costa, Milton S. Rainey, Fred A. Moe, William M. Genome sequence of the organohalide-respiring Dehalogenimonas alkenigignens type strain (IP3-3(T)) |
title | Genome sequence of the organohalide-respiring Dehalogenimonas alkenigignens type strain (IP3-3(T)) |
title_full | Genome sequence of the organohalide-respiring Dehalogenimonas alkenigignens type strain (IP3-3(T)) |
title_fullStr | Genome sequence of the organohalide-respiring Dehalogenimonas alkenigignens type strain (IP3-3(T)) |
title_full_unstemmed | Genome sequence of the organohalide-respiring Dehalogenimonas alkenigignens type strain (IP3-3(T)) |
title_short | Genome sequence of the organohalide-respiring Dehalogenimonas alkenigignens type strain (IP3-3(T)) |
title_sort | genome sequence of the organohalide-respiring dehalogenimonas alkenigignens type strain (ip3-3(t)) |
topic | Short Genome Report |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4918011/ https://www.ncbi.nlm.nih.gov/pubmed/27340512 http://dx.doi.org/10.1186/s40793-016-0165-7 |
work_keys_str_mv | AT keytrenta genomesequenceoftheorganohaliderespiringdehalogenimonasalkenigignenstypestrainip33t AT richmonddrayp genomesequenceoftheorganohaliderespiringdehalogenimonasalkenigignenstypestrainip33t AT bowmankimberlys genomesequenceoftheorganohaliderespiringdehalogenimonasalkenigignenstypestrainip33t AT choyongjoon genomesequenceoftheorganohaliderespiringdehalogenimonasalkenigignenstypestrainip33t AT chunjongsik genomesequenceoftheorganohaliderespiringdehalogenimonasalkenigignenstypestrainip33t AT dacostamiltons genomesequenceoftheorganohaliderespiringdehalogenimonasalkenigignenstypestrainip33t AT raineyfreda genomesequenceoftheorganohaliderespiringdehalogenimonasalkenigignenstypestrainip33t AT moewilliamm genomesequenceoftheorganohaliderespiringdehalogenimonasalkenigignenstypestrainip33t |