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High-quality permanent draft genome sequence of Ensifer sp. PC2, isolated from a nitrogen-fixing root nodule of the legume tree (Khejri) native to the Thar Desert of India
Ensifer sp. PC2 is an aerobic, motile, Gram-negative, non-spore-forming rod that was isolated from a nitrogen-fixing nodule of the tree legume P. cineraria (L.) Druce (Khejri), which is a keystone species that grows in arid and semi-arid regions of the Indian Thar desert. Strain PC2 exists as a domi...
Autores principales: | , , , , , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2016
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4918122/ https://www.ncbi.nlm.nih.gov/pubmed/27340511 http://dx.doi.org/10.1186/s40793-016-0157-7 |
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author | Gehlot, Hukam Singh Ardley, Julie Tak, Nisha Tian, Rui Poonar, Neetu Meghwal, Raju R. Rathi, Sonam Tiwari, Ravi Adnawani, Wan Seshadri, Rekha Reddy, T. B. K. Pati, Amrita Woyke, Tanja Pillay, Manoj Markowitz, Victor Baeshen, Mohammed N. Al-Hejin, Ahmed M. Ivanova, Natalia Kyrpides, Nikos Reeve, Wayne |
author_facet | Gehlot, Hukam Singh Ardley, Julie Tak, Nisha Tian, Rui Poonar, Neetu Meghwal, Raju R. Rathi, Sonam Tiwari, Ravi Adnawani, Wan Seshadri, Rekha Reddy, T. B. K. Pati, Amrita Woyke, Tanja Pillay, Manoj Markowitz, Victor Baeshen, Mohammed N. Al-Hejin, Ahmed M. Ivanova, Natalia Kyrpides, Nikos Reeve, Wayne |
author_sort | Gehlot, Hukam Singh |
collection | PubMed |
description | Ensifer sp. PC2 is an aerobic, motile, Gram-negative, non-spore-forming rod that was isolated from a nitrogen-fixing nodule of the tree legume P. cineraria (L.) Druce (Khejri), which is a keystone species that grows in arid and semi-arid regions of the Indian Thar desert. Strain PC2 exists as a dominant saprophyte in alkaline soils of Western Rajasthan. It is fast growing, well-adapted to arid conditions and is able to form an effective symbiosis with several annual crop legumes as well as species of mimosoid trees and shrubs. Here we describe the features of Ensifer sp. PC2, together with genome sequence information and its annotation. The 8,458,965 bp high-quality permanent draft genome is arranged into 171 scaffolds of 171 contigs containing 8,344 protein-coding genes and 139 RNA-only encoding genes, and is one of the rhizobial genomes sequenced as part of the DOE Joint Genome Institute 2010 Genomic Encyclopedia for Bacteria and Archaea-Root Nodule Bacteria (GEBA-RNB) project proposal. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1186/s40793-016-0157-7) contains supplementary material, which is available to authorized users. |
format | Online Article Text |
id | pubmed-4918122 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-49181222016-06-24 High-quality permanent draft genome sequence of Ensifer sp. PC2, isolated from a nitrogen-fixing root nodule of the legume tree (Khejri) native to the Thar Desert of India Gehlot, Hukam Singh Ardley, Julie Tak, Nisha Tian, Rui Poonar, Neetu Meghwal, Raju R. Rathi, Sonam Tiwari, Ravi Adnawani, Wan Seshadri, Rekha Reddy, T. B. K. Pati, Amrita Woyke, Tanja Pillay, Manoj Markowitz, Victor Baeshen, Mohammed N. Al-Hejin, Ahmed M. Ivanova, Natalia Kyrpides, Nikos Reeve, Wayne Stand Genomic Sci Short Genome Report Ensifer sp. PC2 is an aerobic, motile, Gram-negative, non-spore-forming rod that was isolated from a nitrogen-fixing nodule of the tree legume P. cineraria (L.) Druce (Khejri), which is a keystone species that grows in arid and semi-arid regions of the Indian Thar desert. Strain PC2 exists as a dominant saprophyte in alkaline soils of Western Rajasthan. It is fast growing, well-adapted to arid conditions and is able to form an effective symbiosis with several annual crop legumes as well as species of mimosoid trees and shrubs. Here we describe the features of Ensifer sp. PC2, together with genome sequence information and its annotation. The 8,458,965 bp high-quality permanent draft genome is arranged into 171 scaffolds of 171 contigs containing 8,344 protein-coding genes and 139 RNA-only encoding genes, and is one of the rhizobial genomes sequenced as part of the DOE Joint Genome Institute 2010 Genomic Encyclopedia for Bacteria and Archaea-Root Nodule Bacteria (GEBA-RNB) project proposal. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1186/s40793-016-0157-7) contains supplementary material, which is available to authorized users. BioMed Central 2016-06-23 /pmc/articles/PMC4918122/ /pubmed/27340511 http://dx.doi.org/10.1186/s40793-016-0157-7 Text en © The Author(s). 2016 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated. |
spellingShingle | Short Genome Report Gehlot, Hukam Singh Ardley, Julie Tak, Nisha Tian, Rui Poonar, Neetu Meghwal, Raju R. Rathi, Sonam Tiwari, Ravi Adnawani, Wan Seshadri, Rekha Reddy, T. B. K. Pati, Amrita Woyke, Tanja Pillay, Manoj Markowitz, Victor Baeshen, Mohammed N. Al-Hejin, Ahmed M. Ivanova, Natalia Kyrpides, Nikos Reeve, Wayne High-quality permanent draft genome sequence of Ensifer sp. PC2, isolated from a nitrogen-fixing root nodule of the legume tree (Khejri) native to the Thar Desert of India |
title | High-quality permanent draft genome sequence of Ensifer sp. PC2, isolated from a nitrogen-fixing root nodule of the legume tree (Khejri) native to the Thar Desert of India |
title_full | High-quality permanent draft genome sequence of Ensifer sp. PC2, isolated from a nitrogen-fixing root nodule of the legume tree (Khejri) native to the Thar Desert of India |
title_fullStr | High-quality permanent draft genome sequence of Ensifer sp. PC2, isolated from a nitrogen-fixing root nodule of the legume tree (Khejri) native to the Thar Desert of India |
title_full_unstemmed | High-quality permanent draft genome sequence of Ensifer sp. PC2, isolated from a nitrogen-fixing root nodule of the legume tree (Khejri) native to the Thar Desert of India |
title_short | High-quality permanent draft genome sequence of Ensifer sp. PC2, isolated from a nitrogen-fixing root nodule of the legume tree (Khejri) native to the Thar Desert of India |
title_sort | high-quality permanent draft genome sequence of ensifer sp. pc2, isolated from a nitrogen-fixing root nodule of the legume tree (khejri) native to the thar desert of india |
topic | Short Genome Report |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4918122/ https://www.ncbi.nlm.nih.gov/pubmed/27340511 http://dx.doi.org/10.1186/s40793-016-0157-7 |
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