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GPCRdb: the G protein‐coupled receptor database – an introduction

GPCRs make up the largest family of human membrane proteins and of drug targets. Recent advances in GPCR pharmacology and crystallography have shed new light on signal transduction, allosteric modulation and biased signalling, translating into new mechanisms and principles for drug design. The GPCR...

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Autores principales: Munk, C, Isberg, V, Mordalski, S, Harpsøe, K, Rataj, K, Hauser, A S, Kolb, P, Bojarski, A J, Vriend, G, Gloriam, D E
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4919580/
https://www.ncbi.nlm.nih.gov/pubmed/27155948
http://dx.doi.org/10.1111/bph.13509
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author Munk, C
Isberg, V
Mordalski, S
Harpsøe, K
Rataj, K
Hauser, A S
Kolb, P
Bojarski, A J
Vriend, G
Gloriam, D E
author_facet Munk, C
Isberg, V
Mordalski, S
Harpsøe, K
Rataj, K
Hauser, A S
Kolb, P
Bojarski, A J
Vriend, G
Gloriam, D E
author_sort Munk, C
collection PubMed
description GPCRs make up the largest family of human membrane proteins and of drug targets. Recent advances in GPCR pharmacology and crystallography have shed new light on signal transduction, allosteric modulation and biased signalling, translating into new mechanisms and principles for drug design. The GPCR database, GPCRdb, has served the community for over 20 years and has recently been extended to include a more multidisciplinary audience. This review is intended to introduce new users to the services in GPCRdb, which meets three overall purposes: firstly, to provide reference data in an integrated, annotated and structured fashion, with a focus on sequences, structures, single‐point mutations and ligand interactions. Secondly, to equip the community with a suite of web tools for swift analysis of structures, sequence similarities, receptor relationships, and ligand target profiles. Thirdly, to facilitate dissemination through interactive diagrams of, for example, receptor residue topologies, phylogenetic relationships and crystal structure statistics. Herein, these services are described for the first time; visitors and guides are provided with good practices for their utilization. Finally, we describe complementary databases cross‐referenced by GPCRdb and web servers with corresponding functionality.
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spelling pubmed-49195802016-11-18 GPCRdb: the G protein‐coupled receptor database – an introduction Munk, C Isberg, V Mordalski, S Harpsøe, K Rataj, K Hauser, A S Kolb, P Bojarski, A J Vriend, G Gloriam, D E Br J Pharmacol Review Articles GPCRs make up the largest family of human membrane proteins and of drug targets. Recent advances in GPCR pharmacology and crystallography have shed new light on signal transduction, allosteric modulation and biased signalling, translating into new mechanisms and principles for drug design. The GPCR database, GPCRdb, has served the community for over 20 years and has recently been extended to include a more multidisciplinary audience. This review is intended to introduce new users to the services in GPCRdb, which meets three overall purposes: firstly, to provide reference data in an integrated, annotated and structured fashion, with a focus on sequences, structures, single‐point mutations and ligand interactions. Secondly, to equip the community with a suite of web tools for swift analysis of structures, sequence similarities, receptor relationships, and ligand target profiles. Thirdly, to facilitate dissemination through interactive diagrams of, for example, receptor residue topologies, phylogenetic relationships and crystal structure statistics. Herein, these services are described for the first time; visitors and guides are provided with good practices for their utilization. Finally, we describe complementary databases cross‐referenced by GPCRdb and web servers with corresponding functionality. John Wiley and Sons Inc. 2016-06-03 2016-07 /pmc/articles/PMC4919580/ /pubmed/27155948 http://dx.doi.org/10.1111/bph.13509 Text en © 2016 The Authors. British Journal of Pharmacology published by John Wiley & Sons Ltd on behalf of British Pharmacological Society. This is an open access article under the terms of the Creative Commons Attribution‐NonCommercial‐NoDerivs (http://creativecommons.org/licenses/by-nc-nd/4.0/) License, which permits use and distribution in any medium, provided the original work is properly cited, the use is non‐commercial and no modifications or adaptations are made.
spellingShingle Review Articles
Munk, C
Isberg, V
Mordalski, S
Harpsøe, K
Rataj, K
Hauser, A S
Kolb, P
Bojarski, A J
Vriend, G
Gloriam, D E
GPCRdb: the G protein‐coupled receptor database – an introduction
title GPCRdb: the G protein‐coupled receptor database – an introduction
title_full GPCRdb: the G protein‐coupled receptor database – an introduction
title_fullStr GPCRdb: the G protein‐coupled receptor database – an introduction
title_full_unstemmed GPCRdb: the G protein‐coupled receptor database – an introduction
title_short GPCRdb: the G protein‐coupled receptor database – an introduction
title_sort gpcrdb: the g protein‐coupled receptor database – an introduction
topic Review Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4919580/
https://www.ncbi.nlm.nih.gov/pubmed/27155948
http://dx.doi.org/10.1111/bph.13509
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