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Unified selective sorting approach to analyse multi-electrode extracellular data

Extracellular data analysis has become a quintessential method for understanding the neurophysiological responses to stimuli. This demands stringent techniques owing to the complicated nature of the recording environment. In this paper, we highlight the challenges in extracellular multi-electrode re...

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Autores principales: Veerabhadrappa, R., Lim, C. P., Nguyen, T. T., Berk, M., Tye, S. J., Monaghan, P., Nahavandi, S., Bhatti, A.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4919792/
https://www.ncbi.nlm.nih.gov/pubmed/27339770
http://dx.doi.org/10.1038/srep28533
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author Veerabhadrappa, R.
Lim, C. P.
Nguyen, T. T.
Berk, M.
Tye, S. J.
Monaghan, P.
Nahavandi, S.
Bhatti, A.
author_facet Veerabhadrappa, R.
Lim, C. P.
Nguyen, T. T.
Berk, M.
Tye, S. J.
Monaghan, P.
Nahavandi, S.
Bhatti, A.
author_sort Veerabhadrappa, R.
collection PubMed
description Extracellular data analysis has become a quintessential method for understanding the neurophysiological responses to stimuli. This demands stringent techniques owing to the complicated nature of the recording environment. In this paper, we highlight the challenges in extracellular multi-electrode recording and data analysis as well as the limitations pertaining to some of the currently employed methodologies. To address some of the challenges, we present a unified algorithm in the form of selective sorting. Selective sorting is modelled around hypothesized generative model, which addresses the natural phenomena of spikes triggered by an intricate neuronal population. The algorithm incorporates Cepstrum of Bispectrum, ad hoc clustering algorithms, wavelet transforms, least square and correlation concepts which strategically tailors a sequence to characterize and form distinctive clusters. Additionally, we demonstrate the influence of noise modelled wavelets to sort overlapping spikes. The algorithm is evaluated using both raw and synthesized data sets with different levels of complexity and the performances are tabulated for comparison using widely accepted qualitative and quantitative indicators.
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spelling pubmed-49197922016-06-28 Unified selective sorting approach to analyse multi-electrode extracellular data Veerabhadrappa, R. Lim, C. P. Nguyen, T. T. Berk, M. Tye, S. J. Monaghan, P. Nahavandi, S. Bhatti, A. Sci Rep Article Extracellular data analysis has become a quintessential method for understanding the neurophysiological responses to stimuli. This demands stringent techniques owing to the complicated nature of the recording environment. In this paper, we highlight the challenges in extracellular multi-electrode recording and data analysis as well as the limitations pertaining to some of the currently employed methodologies. To address some of the challenges, we present a unified algorithm in the form of selective sorting. Selective sorting is modelled around hypothesized generative model, which addresses the natural phenomena of spikes triggered by an intricate neuronal population. The algorithm incorporates Cepstrum of Bispectrum, ad hoc clustering algorithms, wavelet transforms, least square and correlation concepts which strategically tailors a sequence to characterize and form distinctive clusters. Additionally, we demonstrate the influence of noise modelled wavelets to sort overlapping spikes. The algorithm is evaluated using both raw and synthesized data sets with different levels of complexity and the performances are tabulated for comparison using widely accepted qualitative and quantitative indicators. Nature Publishing Group 2016-06-24 /pmc/articles/PMC4919792/ /pubmed/27339770 http://dx.doi.org/10.1038/srep28533 Text en Copyright © 2016, Macmillan Publishers Limited http://creativecommons.org/licenses/by/4.0/ This work is licensed under a Creative Commons Attribution 4.0 International License. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in the credit line; if the material is not included under the Creative Commons license, users will need to obtain permission from the license holder to reproduce the material. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/
spellingShingle Article
Veerabhadrappa, R.
Lim, C. P.
Nguyen, T. T.
Berk, M.
Tye, S. J.
Monaghan, P.
Nahavandi, S.
Bhatti, A.
Unified selective sorting approach to analyse multi-electrode extracellular data
title Unified selective sorting approach to analyse multi-electrode extracellular data
title_full Unified selective sorting approach to analyse multi-electrode extracellular data
title_fullStr Unified selective sorting approach to analyse multi-electrode extracellular data
title_full_unstemmed Unified selective sorting approach to analyse multi-electrode extracellular data
title_short Unified selective sorting approach to analyse multi-electrode extracellular data
title_sort unified selective sorting approach to analyse multi-electrode extracellular data
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4919792/
https://www.ncbi.nlm.nih.gov/pubmed/27339770
http://dx.doi.org/10.1038/srep28533
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