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Unified selective sorting approach to analyse multi-electrode extracellular data
Extracellular data analysis has become a quintessential method for understanding the neurophysiological responses to stimuli. This demands stringent techniques owing to the complicated nature of the recording environment. In this paper, we highlight the challenges in extracellular multi-electrode re...
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group
2016
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4919792/ https://www.ncbi.nlm.nih.gov/pubmed/27339770 http://dx.doi.org/10.1038/srep28533 |
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author | Veerabhadrappa, R. Lim, C. P. Nguyen, T. T. Berk, M. Tye, S. J. Monaghan, P. Nahavandi, S. Bhatti, A. |
author_facet | Veerabhadrappa, R. Lim, C. P. Nguyen, T. T. Berk, M. Tye, S. J. Monaghan, P. Nahavandi, S. Bhatti, A. |
author_sort | Veerabhadrappa, R. |
collection | PubMed |
description | Extracellular data analysis has become a quintessential method for understanding the neurophysiological responses to stimuli. This demands stringent techniques owing to the complicated nature of the recording environment. In this paper, we highlight the challenges in extracellular multi-electrode recording and data analysis as well as the limitations pertaining to some of the currently employed methodologies. To address some of the challenges, we present a unified algorithm in the form of selective sorting. Selective sorting is modelled around hypothesized generative model, which addresses the natural phenomena of spikes triggered by an intricate neuronal population. The algorithm incorporates Cepstrum of Bispectrum, ad hoc clustering algorithms, wavelet transforms, least square and correlation concepts which strategically tailors a sequence to characterize and form distinctive clusters. Additionally, we demonstrate the influence of noise modelled wavelets to sort overlapping spikes. The algorithm is evaluated using both raw and synthesized data sets with different levels of complexity and the performances are tabulated for comparison using widely accepted qualitative and quantitative indicators. |
format | Online Article Text |
id | pubmed-4919792 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | Nature Publishing Group |
record_format | MEDLINE/PubMed |
spelling | pubmed-49197922016-06-28 Unified selective sorting approach to analyse multi-electrode extracellular data Veerabhadrappa, R. Lim, C. P. Nguyen, T. T. Berk, M. Tye, S. J. Monaghan, P. Nahavandi, S. Bhatti, A. Sci Rep Article Extracellular data analysis has become a quintessential method for understanding the neurophysiological responses to stimuli. This demands stringent techniques owing to the complicated nature of the recording environment. In this paper, we highlight the challenges in extracellular multi-electrode recording and data analysis as well as the limitations pertaining to some of the currently employed methodologies. To address some of the challenges, we present a unified algorithm in the form of selective sorting. Selective sorting is modelled around hypothesized generative model, which addresses the natural phenomena of spikes triggered by an intricate neuronal population. The algorithm incorporates Cepstrum of Bispectrum, ad hoc clustering algorithms, wavelet transforms, least square and correlation concepts which strategically tailors a sequence to characterize and form distinctive clusters. Additionally, we demonstrate the influence of noise modelled wavelets to sort overlapping spikes. The algorithm is evaluated using both raw and synthesized data sets with different levels of complexity and the performances are tabulated for comparison using widely accepted qualitative and quantitative indicators. Nature Publishing Group 2016-06-24 /pmc/articles/PMC4919792/ /pubmed/27339770 http://dx.doi.org/10.1038/srep28533 Text en Copyright © 2016, Macmillan Publishers Limited http://creativecommons.org/licenses/by/4.0/ This work is licensed under a Creative Commons Attribution 4.0 International License. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in the credit line; if the material is not included under the Creative Commons license, users will need to obtain permission from the license holder to reproduce the material. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ |
spellingShingle | Article Veerabhadrappa, R. Lim, C. P. Nguyen, T. T. Berk, M. Tye, S. J. Monaghan, P. Nahavandi, S. Bhatti, A. Unified selective sorting approach to analyse multi-electrode extracellular data |
title | Unified selective sorting approach to analyse multi-electrode extracellular data |
title_full | Unified selective sorting approach to analyse multi-electrode extracellular data |
title_fullStr | Unified selective sorting approach to analyse multi-electrode extracellular data |
title_full_unstemmed | Unified selective sorting approach to analyse multi-electrode extracellular data |
title_short | Unified selective sorting approach to analyse multi-electrode extracellular data |
title_sort | unified selective sorting approach to analyse multi-electrode extracellular data |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4919792/ https://www.ncbi.nlm.nih.gov/pubmed/27339770 http://dx.doi.org/10.1038/srep28533 |
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