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Metabolomics reveals significant variations in metabolites and correlations regarding the maturation of walnuts (Juglans regia L.)
The content of walnut metabolites is related to its nutritive value and physiological characteristics, however, comprehensive information concerning the metabolome of walnut kernels is limited. In this study we analyzed the metabolites of walnut kernels at five developmental stages from filling to r...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
The Company of Biologists Ltd
2016
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4920193/ https://www.ncbi.nlm.nih.gov/pubmed/27215321 http://dx.doi.org/10.1242/bio.017863 |
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author | Rao, Guodong Sui, Jinkai Zhang, Jianguo |
author_facet | Rao, Guodong Sui, Jinkai Zhang, Jianguo |
author_sort | Rao, Guodong |
collection | PubMed |
description | The content of walnut metabolites is related to its nutritive value and physiological characteristics, however, comprehensive information concerning the metabolome of walnut kernels is limited. In this study we analyzed the metabolites of walnut kernels at five developmental stages from filling to ripening using GC-MS-based untargeted metabolomics; of a total 252 peaks identified, 85 metabolites were positively identified. Further statistical analysis revealed that these 85 metabolites covered different types of metabolism pathways. PCA scores revealed that the metabolic compositions of the embryo are different at each stage, while the metabolic composition of the endotesta could not be significantly separated into distinct groups. Additionally, 7225 metabolite-metabolite correlations were detected in walnut kernel by a Pearson correlation coefficient approach; during screening of the calculated correlations, 463 and 1047 were determined to be significant with r(2)≥0.49 and had a false discovery rate (FDR) ≤0.05 in endotesta and embryo, respectively. This work provides the first comprehensive metabolomic study of walnut kernels and reveals that most of the carbohydrate and protein-derived carbon was transferred into other compounds, such as fatty acids, during the maturation of walnuts, which may potentially provide the basis for further studies on walnut kernel metabolism. |
format | Online Article Text |
id | pubmed-4920193 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | The Company of Biologists Ltd |
record_format | MEDLINE/PubMed |
spelling | pubmed-49201932016-07-07 Metabolomics reveals significant variations in metabolites and correlations regarding the maturation of walnuts (Juglans regia L.) Rao, Guodong Sui, Jinkai Zhang, Jianguo Biol Open Research Article The content of walnut metabolites is related to its nutritive value and physiological characteristics, however, comprehensive information concerning the metabolome of walnut kernels is limited. In this study we analyzed the metabolites of walnut kernels at five developmental stages from filling to ripening using GC-MS-based untargeted metabolomics; of a total 252 peaks identified, 85 metabolites were positively identified. Further statistical analysis revealed that these 85 metabolites covered different types of metabolism pathways. PCA scores revealed that the metabolic compositions of the embryo are different at each stage, while the metabolic composition of the endotesta could not be significantly separated into distinct groups. Additionally, 7225 metabolite-metabolite correlations were detected in walnut kernel by a Pearson correlation coefficient approach; during screening of the calculated correlations, 463 and 1047 were determined to be significant with r(2)≥0.49 and had a false discovery rate (FDR) ≤0.05 in endotesta and embryo, respectively. This work provides the first comprehensive metabolomic study of walnut kernels and reveals that most of the carbohydrate and protein-derived carbon was transferred into other compounds, such as fatty acids, during the maturation of walnuts, which may potentially provide the basis for further studies on walnut kernel metabolism. The Company of Biologists Ltd 2016-05-23 /pmc/articles/PMC4920193/ /pubmed/27215321 http://dx.doi.org/10.1242/bio.017863 Text en © 2016. Published by The Company of Biologists Ltd http://creativecommons.org/licenses/by/3.0 This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/3.0), which permits unrestricted use, distribution and reproduction in any medium provided that the original work is properly attributed. |
spellingShingle | Research Article Rao, Guodong Sui, Jinkai Zhang, Jianguo Metabolomics reveals significant variations in metabolites and correlations regarding the maturation of walnuts (Juglans regia L.) |
title | Metabolomics reveals significant variations in metabolites and correlations regarding the maturation of walnuts (Juglans regia L.) |
title_full | Metabolomics reveals significant variations in metabolites and correlations regarding the maturation of walnuts (Juglans regia L.) |
title_fullStr | Metabolomics reveals significant variations in metabolites and correlations regarding the maturation of walnuts (Juglans regia L.) |
title_full_unstemmed | Metabolomics reveals significant variations in metabolites and correlations regarding the maturation of walnuts (Juglans regia L.) |
title_short | Metabolomics reveals significant variations in metabolites and correlations regarding the maturation of walnuts (Juglans regia L.) |
title_sort | metabolomics reveals significant variations in metabolites and correlations regarding the maturation of walnuts (juglans regia l.) |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4920193/ https://www.ncbi.nlm.nih.gov/pubmed/27215321 http://dx.doi.org/10.1242/bio.017863 |
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