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Evaluation of Nucleic Acid Preservation Cards for West Nile Virus Testing in Dead Birds

The California West Nile virus (WNV) Dead Bird Surveillance Program (DBSP) is an important component of WNV surveillance in the state. We evaluated FTA™ and RNASound™ cards as an alternative method for sampling dead birds for WNV molecular testing as these cards allow for more cost effective, rapid,...

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Autores principales: Foss, Leslie, Reisen, William K., Fang, Ying, Kramer, Vicki, Padgett, Kerry
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4920385/
https://www.ncbi.nlm.nih.gov/pubmed/27341492
http://dx.doi.org/10.1371/journal.pone.0157555
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author Foss, Leslie
Reisen, William K.
Fang, Ying
Kramer, Vicki
Padgett, Kerry
author_facet Foss, Leslie
Reisen, William K.
Fang, Ying
Kramer, Vicki
Padgett, Kerry
author_sort Foss, Leslie
collection PubMed
description The California West Nile virus (WNV) Dead Bird Surveillance Program (DBSP) is an important component of WNV surveillance in the state. We evaluated FTA™ and RNASound™ cards as an alternative method for sampling dead birds for WNV molecular testing as these cards allow for more cost effective, rapid, and safer diagnostic sampling than the shipment of bird carcasses. To evaluate accuracy of results among avian sampling regimes, Reverse-Transcription Polymerase Chain Reaction (RT-PCR) results from FTA™ and RNASound™ cards were compared with results from kidney tissue, brain tissue, or oral swabs in lysis buffer in 2012–2013. In addition, RT-PCR results were compared with results from oral swabs tested by rapid antigen tests (RAMP™ and VecTOR™). While test results from the cards were not as sensitive as kidney tissue testing, they were more likely to provide accurate results than rapid antigen tests, and detected WNV in corvids as well as in other passerines, raptors, and waterfowl. Overall, WNV RT-PCR cycle threshold (Ct) scores from the cards were higher than those from tissue testing, but both card products displayed high sensitivity and specificity. American Crow samples provided the highest sensitivity. The cards also proved to be easier and more convenient vehicles for collecting and shipping samples, and in 2014 our program launched use of RNASound™ cards in the DBSP. Both FTA™ and RNASound™ products displayed 96% agreement with tissue results and are an adequate alternative sampling method for WNV dead bird testing.
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spelling pubmed-49203852016-07-18 Evaluation of Nucleic Acid Preservation Cards for West Nile Virus Testing in Dead Birds Foss, Leslie Reisen, William K. Fang, Ying Kramer, Vicki Padgett, Kerry PLoS One Research Article The California West Nile virus (WNV) Dead Bird Surveillance Program (DBSP) is an important component of WNV surveillance in the state. We evaluated FTA™ and RNASound™ cards as an alternative method for sampling dead birds for WNV molecular testing as these cards allow for more cost effective, rapid, and safer diagnostic sampling than the shipment of bird carcasses. To evaluate accuracy of results among avian sampling regimes, Reverse-Transcription Polymerase Chain Reaction (RT-PCR) results from FTA™ and RNASound™ cards were compared with results from kidney tissue, brain tissue, or oral swabs in lysis buffer in 2012–2013. In addition, RT-PCR results were compared with results from oral swabs tested by rapid antigen tests (RAMP™ and VecTOR™). While test results from the cards were not as sensitive as kidney tissue testing, they were more likely to provide accurate results than rapid antigen tests, and detected WNV in corvids as well as in other passerines, raptors, and waterfowl. Overall, WNV RT-PCR cycle threshold (Ct) scores from the cards were higher than those from tissue testing, but both card products displayed high sensitivity and specificity. American Crow samples provided the highest sensitivity. The cards also proved to be easier and more convenient vehicles for collecting and shipping samples, and in 2014 our program launched use of RNASound™ cards in the DBSP. Both FTA™ and RNASound™ products displayed 96% agreement with tissue results and are an adequate alternative sampling method for WNV dead bird testing. Public Library of Science 2016-06-24 /pmc/articles/PMC4920385/ /pubmed/27341492 http://dx.doi.org/10.1371/journal.pone.0157555 Text en © 2016 Foss et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Foss, Leslie
Reisen, William K.
Fang, Ying
Kramer, Vicki
Padgett, Kerry
Evaluation of Nucleic Acid Preservation Cards for West Nile Virus Testing in Dead Birds
title Evaluation of Nucleic Acid Preservation Cards for West Nile Virus Testing in Dead Birds
title_full Evaluation of Nucleic Acid Preservation Cards for West Nile Virus Testing in Dead Birds
title_fullStr Evaluation of Nucleic Acid Preservation Cards for West Nile Virus Testing in Dead Birds
title_full_unstemmed Evaluation of Nucleic Acid Preservation Cards for West Nile Virus Testing in Dead Birds
title_short Evaluation of Nucleic Acid Preservation Cards for West Nile Virus Testing in Dead Birds
title_sort evaluation of nucleic acid preservation cards for west nile virus testing in dead birds
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4920385/
https://www.ncbi.nlm.nih.gov/pubmed/27341492
http://dx.doi.org/10.1371/journal.pone.0157555
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