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Task-Related Edge Density (TED)—A New Method for Revealing Dynamic Network Formation in fMRI Data of the Human Brain

The formation of transient networks in response to external stimuli or as a reflection of internal cognitive processes is a hallmark of human brain function. However, its identification in fMRI data of the human brain is notoriously difficult. Here we propose a new method of fMRI data analysis that...

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Autores principales: Lohmann, Gabriele, Stelzer, Johannes, Zuber, Verena, Buschmann, Tilo, Margulies, Daniel, Bartels, Andreas, Scheffler, Klaus
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4920409/
https://www.ncbi.nlm.nih.gov/pubmed/27341204
http://dx.doi.org/10.1371/journal.pone.0158185
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author Lohmann, Gabriele
Stelzer, Johannes
Zuber, Verena
Buschmann, Tilo
Margulies, Daniel
Bartels, Andreas
Scheffler, Klaus
author_facet Lohmann, Gabriele
Stelzer, Johannes
Zuber, Verena
Buschmann, Tilo
Margulies, Daniel
Bartels, Andreas
Scheffler, Klaus
author_sort Lohmann, Gabriele
collection PubMed
description The formation of transient networks in response to external stimuli or as a reflection of internal cognitive processes is a hallmark of human brain function. However, its identification in fMRI data of the human brain is notoriously difficult. Here we propose a new method of fMRI data analysis that tackles this problem by considering large-scale, task-related synchronisation networks. Networks consist of nodes and edges connecting them, where nodes correspond to voxels in fMRI data, and the weight of an edge is determined via task-related changes in dynamic synchronisation between their respective times series. Based on these definitions, we developed a new data analysis algorithm that identifies edges that show differing levels of synchrony between two distinct task conditions and that occur in dense packs with similar characteristics. Hence, we call this approach “Task-related Edge Density” (TED). TED proved to be a very strong marker for dynamic network formation that easily lends itself to statistical analysis using large scale statistical inference. A major advantage of TED compared to other methods is that it does not depend on any specific hemodynamic response model, and it also does not require a presegmentation of the data for dimensionality reduction as it can handle large networks consisting of tens of thousands of voxels. We applied TED to fMRI data of a fingertapping and an emotion processing task provided by the Human Connectome Project. TED revealed network-based involvement of a large number of brain areas that evaded detection using traditional GLM-based analysis. We show that our proposed method provides an entirely new window into the immense complexity of human brain function.
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spelling pubmed-49204092016-07-18 Task-Related Edge Density (TED)—A New Method for Revealing Dynamic Network Formation in fMRI Data of the Human Brain Lohmann, Gabriele Stelzer, Johannes Zuber, Verena Buschmann, Tilo Margulies, Daniel Bartels, Andreas Scheffler, Klaus PLoS One Research Article The formation of transient networks in response to external stimuli or as a reflection of internal cognitive processes is a hallmark of human brain function. However, its identification in fMRI data of the human brain is notoriously difficult. Here we propose a new method of fMRI data analysis that tackles this problem by considering large-scale, task-related synchronisation networks. Networks consist of nodes and edges connecting them, where nodes correspond to voxels in fMRI data, and the weight of an edge is determined via task-related changes in dynamic synchronisation between their respective times series. Based on these definitions, we developed a new data analysis algorithm that identifies edges that show differing levels of synchrony between two distinct task conditions and that occur in dense packs with similar characteristics. Hence, we call this approach “Task-related Edge Density” (TED). TED proved to be a very strong marker for dynamic network formation that easily lends itself to statistical analysis using large scale statistical inference. A major advantage of TED compared to other methods is that it does not depend on any specific hemodynamic response model, and it also does not require a presegmentation of the data for dimensionality reduction as it can handle large networks consisting of tens of thousands of voxels. We applied TED to fMRI data of a fingertapping and an emotion processing task provided by the Human Connectome Project. TED revealed network-based involvement of a large number of brain areas that evaded detection using traditional GLM-based analysis. We show that our proposed method provides an entirely new window into the immense complexity of human brain function. Public Library of Science 2016-06-24 /pmc/articles/PMC4920409/ /pubmed/27341204 http://dx.doi.org/10.1371/journal.pone.0158185 Text en © 2016 Lohmann et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Lohmann, Gabriele
Stelzer, Johannes
Zuber, Verena
Buschmann, Tilo
Margulies, Daniel
Bartels, Andreas
Scheffler, Klaus
Task-Related Edge Density (TED)—A New Method for Revealing Dynamic Network Formation in fMRI Data of the Human Brain
title Task-Related Edge Density (TED)—A New Method for Revealing Dynamic Network Formation in fMRI Data of the Human Brain
title_full Task-Related Edge Density (TED)—A New Method for Revealing Dynamic Network Formation in fMRI Data of the Human Brain
title_fullStr Task-Related Edge Density (TED)—A New Method for Revealing Dynamic Network Formation in fMRI Data of the Human Brain
title_full_unstemmed Task-Related Edge Density (TED)—A New Method for Revealing Dynamic Network Formation in fMRI Data of the Human Brain
title_short Task-Related Edge Density (TED)—A New Method for Revealing Dynamic Network Formation in fMRI Data of the Human Brain
title_sort task-related edge density (ted)—a new method for revealing dynamic network formation in fmri data of the human brain
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4920409/
https://www.ncbi.nlm.nih.gov/pubmed/27341204
http://dx.doi.org/10.1371/journal.pone.0158185
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