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Chronic Rhinosinusitis Patients Show Accumulation of Genetic Variants in PARS2

Genetic studies of chronic rhinosinusitis (CRS) have identified a total of 53 CRS-associated SNPs that were subsequently evaluated for their reproducibility in a recent study. The rs2873551 SNP in linkage disequilibrium with PARS2 showed the strongest association signal. The present study aims to co...

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Autores principales: Henmyr, Viktor, Lind-Halldén, Christina, Halldén, Christer, Säll, Torbjörn, Carlberg, Daniel, Bachert, Claus, Cardell, Lars-Olaf
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4922623/
https://www.ncbi.nlm.nih.gov/pubmed/27348859
http://dx.doi.org/10.1371/journal.pone.0158202
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author Henmyr, Viktor
Lind-Halldén, Christina
Halldén, Christer
Säll, Torbjörn
Carlberg, Daniel
Bachert, Claus
Cardell, Lars-Olaf
author_facet Henmyr, Viktor
Lind-Halldén, Christina
Halldén, Christer
Säll, Torbjörn
Carlberg, Daniel
Bachert, Claus
Cardell, Lars-Olaf
author_sort Henmyr, Viktor
collection PubMed
description Genetic studies of chronic rhinosinusitis (CRS) have identified a total of 53 CRS-associated SNPs that were subsequently evaluated for their reproducibility in a recent study. The rs2873551 SNP in linkage disequilibrium with PARS2 showed the strongest association signal. The present study aims to comprehensively screen for rare variants in PARS2 and evaluate for accumulation of such variants in CRS-patients. Sanger sequencing and long-range PCR were used to screen for rare variants in the putative promoter region and coding sequence of 310 CRS-patients and a total of 21 variants were detected. The mutation spectrum was then compared with data from European populations of the 1000Genomes project (EUR) and the Exome Aggregation Consortium (ExAC). The CRS population showed a significant surplus of low-frequency variants compared with ExAC data. Haplotype analysis of the region showed a significant excess of rare haplotypes in the CRS population compared to the EUR population. Two missense mutations were also genotyped in the 310 CRS patients and 372 CRS-negative controls, but no associations with the disease were found. This is the first re-sequencing study in CRS research and also the first study to show an association of rare variants with the disease.
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spelling pubmed-49226232016-07-18 Chronic Rhinosinusitis Patients Show Accumulation of Genetic Variants in PARS2 Henmyr, Viktor Lind-Halldén, Christina Halldén, Christer Säll, Torbjörn Carlberg, Daniel Bachert, Claus Cardell, Lars-Olaf PLoS One Research Article Genetic studies of chronic rhinosinusitis (CRS) have identified a total of 53 CRS-associated SNPs that were subsequently evaluated for their reproducibility in a recent study. The rs2873551 SNP in linkage disequilibrium with PARS2 showed the strongest association signal. The present study aims to comprehensively screen for rare variants in PARS2 and evaluate for accumulation of such variants in CRS-patients. Sanger sequencing and long-range PCR were used to screen for rare variants in the putative promoter region and coding sequence of 310 CRS-patients and a total of 21 variants were detected. The mutation spectrum was then compared with data from European populations of the 1000Genomes project (EUR) and the Exome Aggregation Consortium (ExAC). The CRS population showed a significant surplus of low-frequency variants compared with ExAC data. Haplotype analysis of the region showed a significant excess of rare haplotypes in the CRS population compared to the EUR population. Two missense mutations were also genotyped in the 310 CRS patients and 372 CRS-negative controls, but no associations with the disease were found. This is the first re-sequencing study in CRS research and also the first study to show an association of rare variants with the disease. Public Library of Science 2016-06-27 /pmc/articles/PMC4922623/ /pubmed/27348859 http://dx.doi.org/10.1371/journal.pone.0158202 Text en © 2016 Henmyr et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Henmyr, Viktor
Lind-Halldén, Christina
Halldén, Christer
Säll, Torbjörn
Carlberg, Daniel
Bachert, Claus
Cardell, Lars-Olaf
Chronic Rhinosinusitis Patients Show Accumulation of Genetic Variants in PARS2
title Chronic Rhinosinusitis Patients Show Accumulation of Genetic Variants in PARS2
title_full Chronic Rhinosinusitis Patients Show Accumulation of Genetic Variants in PARS2
title_fullStr Chronic Rhinosinusitis Patients Show Accumulation of Genetic Variants in PARS2
title_full_unstemmed Chronic Rhinosinusitis Patients Show Accumulation of Genetic Variants in PARS2
title_short Chronic Rhinosinusitis Patients Show Accumulation of Genetic Variants in PARS2
title_sort chronic rhinosinusitis patients show accumulation of genetic variants in pars2
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4922623/
https://www.ncbi.nlm.nih.gov/pubmed/27348859
http://dx.doi.org/10.1371/journal.pone.0158202
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