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Physico-Chemical and Structural Interpretation of Discrete Derivative Indices on N-Tuples Atoms
This report examines the interpretation of the Graph Derivative Indices (GDIs) from three different perspectives (i.e., in structural, steric and electronic terms). It is found that the individual vertex frequencies may be expressed in terms of the geometrical and electronic reactivity of the atoms...
Autores principales: | , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2016
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4926346/ https://www.ncbi.nlm.nih.gov/pubmed/27240357 http://dx.doi.org/10.3390/ijms17060812 |
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author | Martínez-Santiago, Oscar Marrero-Ponce, Yovani Barigye, Stephen J. Le Thi Thu, Huong Torres, F. Javier Zambrano, Cesar H. Muñiz Olite, Jorge L. Cruz-Monteagudo, Maykel Vivas-Reyes, Ricardo Vázquez Infante, Liliana Artiles Martínez, Luis M. |
author_facet | Martínez-Santiago, Oscar Marrero-Ponce, Yovani Barigye, Stephen J. Le Thi Thu, Huong Torres, F. Javier Zambrano, Cesar H. Muñiz Olite, Jorge L. Cruz-Monteagudo, Maykel Vivas-Reyes, Ricardo Vázquez Infante, Liliana Artiles Martínez, Luis M. |
author_sort | Martínez-Santiago, Oscar |
collection | PubMed |
description | This report examines the interpretation of the Graph Derivative Indices (GDIs) from three different perspectives (i.e., in structural, steric and electronic terms). It is found that the individual vertex frequencies may be expressed in terms of the geometrical and electronic reactivity of the atoms and bonds, respectively. On the other hand, it is demonstrated that the GDIs are sensitive to progressive structural modifications in terms of: size, ramifications, electronic richness, conjugation effects and molecular symmetry. Moreover, it is observed that the GDIs quantify the interaction capacity among molecules and codify information on the activation entropy. A structure property relationship study reveals that there exists a direct correspondence between the individual frequencies of atoms and Hückel’s Free Valence, as well as between the atomic GDIs and the chemical shift in NMR, which collectively validates the theory that these indices codify steric and electronic information of the atoms in a molecule. Taking in consideration the regularity and coherence found in experiments performed with the GDIs, it is possible to say that GDIs possess plausible interpretation in structural and physicochemical terms. |
format | Online Article Text |
id | pubmed-4926346 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-49263462016-07-06 Physico-Chemical and Structural Interpretation of Discrete Derivative Indices on N-Tuples Atoms Martínez-Santiago, Oscar Marrero-Ponce, Yovani Barigye, Stephen J. Le Thi Thu, Huong Torres, F. Javier Zambrano, Cesar H. Muñiz Olite, Jorge L. Cruz-Monteagudo, Maykel Vivas-Reyes, Ricardo Vázquez Infante, Liliana Artiles Martínez, Luis M. Int J Mol Sci Article This report examines the interpretation of the Graph Derivative Indices (GDIs) from three different perspectives (i.e., in structural, steric and electronic terms). It is found that the individual vertex frequencies may be expressed in terms of the geometrical and electronic reactivity of the atoms and bonds, respectively. On the other hand, it is demonstrated that the GDIs are sensitive to progressive structural modifications in terms of: size, ramifications, electronic richness, conjugation effects and molecular symmetry. Moreover, it is observed that the GDIs quantify the interaction capacity among molecules and codify information on the activation entropy. A structure property relationship study reveals that there exists a direct correspondence between the individual frequencies of atoms and Hückel’s Free Valence, as well as between the atomic GDIs and the chemical shift in NMR, which collectively validates the theory that these indices codify steric and electronic information of the atoms in a molecule. Taking in consideration the regularity and coherence found in experiments performed with the GDIs, it is possible to say that GDIs possess plausible interpretation in structural and physicochemical terms. MDPI 2016-05-27 /pmc/articles/PMC4926346/ /pubmed/27240357 http://dx.doi.org/10.3390/ijms17060812 Text en © 2016 by the authors; licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC-BY) license (http://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Martínez-Santiago, Oscar Marrero-Ponce, Yovani Barigye, Stephen J. Le Thi Thu, Huong Torres, F. Javier Zambrano, Cesar H. Muñiz Olite, Jorge L. Cruz-Monteagudo, Maykel Vivas-Reyes, Ricardo Vázquez Infante, Liliana Artiles Martínez, Luis M. Physico-Chemical and Structural Interpretation of Discrete Derivative Indices on N-Tuples Atoms |
title | Physico-Chemical and Structural Interpretation of Discrete Derivative Indices on N-Tuples Atoms |
title_full | Physico-Chemical and Structural Interpretation of Discrete Derivative Indices on N-Tuples Atoms |
title_fullStr | Physico-Chemical and Structural Interpretation of Discrete Derivative Indices on N-Tuples Atoms |
title_full_unstemmed | Physico-Chemical and Structural Interpretation of Discrete Derivative Indices on N-Tuples Atoms |
title_short | Physico-Chemical and Structural Interpretation of Discrete Derivative Indices on N-Tuples Atoms |
title_sort | physico-chemical and structural interpretation of discrete derivative indices on n-tuples atoms |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4926346/ https://www.ncbi.nlm.nih.gov/pubmed/27240357 http://dx.doi.org/10.3390/ijms17060812 |
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