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Physico-Chemical and Structural Interpretation of Discrete Derivative Indices on N-Tuples Atoms

This report examines the interpretation of the Graph Derivative Indices (GDIs) from three different perspectives (i.e., in structural, steric and electronic terms). It is found that the individual vertex frequencies may be expressed in terms of the geometrical and electronic reactivity of the atoms...

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Autores principales: Martínez-Santiago, Oscar, Marrero-Ponce, Yovani, Barigye, Stephen J., Le Thi Thu, Huong, Torres, F. Javier, Zambrano, Cesar H., Muñiz Olite, Jorge L., Cruz-Monteagudo, Maykel, Vivas-Reyes, Ricardo, Vázquez Infante, Liliana, Artiles Martínez, Luis M.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4926346/
https://www.ncbi.nlm.nih.gov/pubmed/27240357
http://dx.doi.org/10.3390/ijms17060812
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author Martínez-Santiago, Oscar
Marrero-Ponce, Yovani
Barigye, Stephen J.
Le Thi Thu, Huong
Torres, F. Javier
Zambrano, Cesar H.
Muñiz Olite, Jorge L.
Cruz-Monteagudo, Maykel
Vivas-Reyes, Ricardo
Vázquez Infante, Liliana
Artiles Martínez, Luis M.
author_facet Martínez-Santiago, Oscar
Marrero-Ponce, Yovani
Barigye, Stephen J.
Le Thi Thu, Huong
Torres, F. Javier
Zambrano, Cesar H.
Muñiz Olite, Jorge L.
Cruz-Monteagudo, Maykel
Vivas-Reyes, Ricardo
Vázquez Infante, Liliana
Artiles Martínez, Luis M.
author_sort Martínez-Santiago, Oscar
collection PubMed
description This report examines the interpretation of the Graph Derivative Indices (GDIs) from three different perspectives (i.e., in structural, steric and electronic terms). It is found that the individual vertex frequencies may be expressed in terms of the geometrical and electronic reactivity of the atoms and bonds, respectively. On the other hand, it is demonstrated that the GDIs are sensitive to progressive structural modifications in terms of: size, ramifications, electronic richness, conjugation effects and molecular symmetry. Moreover, it is observed that the GDIs quantify the interaction capacity among molecules and codify information on the activation entropy. A structure property relationship study reveals that there exists a direct correspondence between the individual frequencies of atoms and Hückel’s Free Valence, as well as between the atomic GDIs and the chemical shift in NMR, which collectively validates the theory that these indices codify steric and electronic information of the atoms in a molecule. Taking in consideration the regularity and coherence found in experiments performed with the GDIs, it is possible to say that GDIs possess plausible interpretation in structural and physicochemical terms.
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spelling pubmed-49263462016-07-06 Physico-Chemical and Structural Interpretation of Discrete Derivative Indices on N-Tuples Atoms Martínez-Santiago, Oscar Marrero-Ponce, Yovani Barigye, Stephen J. Le Thi Thu, Huong Torres, F. Javier Zambrano, Cesar H. Muñiz Olite, Jorge L. Cruz-Monteagudo, Maykel Vivas-Reyes, Ricardo Vázquez Infante, Liliana Artiles Martínez, Luis M. Int J Mol Sci Article This report examines the interpretation of the Graph Derivative Indices (GDIs) from three different perspectives (i.e., in structural, steric and electronic terms). It is found that the individual vertex frequencies may be expressed in terms of the geometrical and electronic reactivity of the atoms and bonds, respectively. On the other hand, it is demonstrated that the GDIs are sensitive to progressive structural modifications in terms of: size, ramifications, electronic richness, conjugation effects and molecular symmetry. Moreover, it is observed that the GDIs quantify the interaction capacity among molecules and codify information on the activation entropy. A structure property relationship study reveals that there exists a direct correspondence between the individual frequencies of atoms and Hückel’s Free Valence, as well as between the atomic GDIs and the chemical shift in NMR, which collectively validates the theory that these indices codify steric and electronic information of the atoms in a molecule. Taking in consideration the regularity and coherence found in experiments performed with the GDIs, it is possible to say that GDIs possess plausible interpretation in structural and physicochemical terms. MDPI 2016-05-27 /pmc/articles/PMC4926346/ /pubmed/27240357 http://dx.doi.org/10.3390/ijms17060812 Text en © 2016 by the authors; licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC-BY) license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Martínez-Santiago, Oscar
Marrero-Ponce, Yovani
Barigye, Stephen J.
Le Thi Thu, Huong
Torres, F. Javier
Zambrano, Cesar H.
Muñiz Olite, Jorge L.
Cruz-Monteagudo, Maykel
Vivas-Reyes, Ricardo
Vázquez Infante, Liliana
Artiles Martínez, Luis M.
Physico-Chemical and Structural Interpretation of Discrete Derivative Indices on N-Tuples Atoms
title Physico-Chemical and Structural Interpretation of Discrete Derivative Indices on N-Tuples Atoms
title_full Physico-Chemical and Structural Interpretation of Discrete Derivative Indices on N-Tuples Atoms
title_fullStr Physico-Chemical and Structural Interpretation of Discrete Derivative Indices on N-Tuples Atoms
title_full_unstemmed Physico-Chemical and Structural Interpretation of Discrete Derivative Indices on N-Tuples Atoms
title_short Physico-Chemical and Structural Interpretation of Discrete Derivative Indices on N-Tuples Atoms
title_sort physico-chemical and structural interpretation of discrete derivative indices on n-tuples atoms
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4926346/
https://www.ncbi.nlm.nih.gov/pubmed/27240357
http://dx.doi.org/10.3390/ijms17060812
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