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Development of an in Silico Model of DPPH• Free Radical Scavenging Capacity: Prediction of Antioxidant Activity of Coumarin Type Compounds

A quantitative structure-activity relationship (QSAR) study of the 2,2-diphenyl-l-picrylhydrazyl (DPPH•) radical scavenging ability of 1373 chemical compounds, using DRAGON molecular descriptors (MD) and the neural network technique, a technique based on the multilayer multilayer perceptron (MLP), w...

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Autores principales: Goya Jorge, Elizabeth, Rayar, Anita Maria, Barigye, Stephen J., Jorge Rodríguez, María Elisa, Sylla-Iyarreta Veitía, Maité
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4926415/
https://www.ncbi.nlm.nih.gov/pubmed/27338348
http://dx.doi.org/10.3390/ijms17060881
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author Goya Jorge, Elizabeth
Rayar, Anita Maria
Barigye, Stephen J.
Jorge Rodríguez, María Elisa
Sylla-Iyarreta Veitía, Maité
author_facet Goya Jorge, Elizabeth
Rayar, Anita Maria
Barigye, Stephen J.
Jorge Rodríguez, María Elisa
Sylla-Iyarreta Veitía, Maité
author_sort Goya Jorge, Elizabeth
collection PubMed
description A quantitative structure-activity relationship (QSAR) study of the 2,2-diphenyl-l-picrylhydrazyl (DPPH•) radical scavenging ability of 1373 chemical compounds, using DRAGON molecular descriptors (MD) and the neural network technique, a technique based on the multilayer multilayer perceptron (MLP), was developed. The built model demonstrated a satisfactory performance for the training [Formula: see text] and test set [Formula: see text] , respectively. To gain greater insight on the relevance of the MD contained in the MLP model, sensitivity and principal component analyses were performed. Moreover, structural and mechanistic interpretation was carried out to comprehend the relationship of the variables in the model with the modeled property. The constructed MLP model was employed to predict the radical scavenging ability for a group of coumarin-type compounds. Finally, in order to validate the model’s predictions, an in vitro assay for one of the compounds (4-hydroxycoumarin) was performed, showing a satisfactory proximity between the experimental and predicted pIC(50) values.
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spelling pubmed-49264152016-07-06 Development of an in Silico Model of DPPH• Free Radical Scavenging Capacity: Prediction of Antioxidant Activity of Coumarin Type Compounds Goya Jorge, Elizabeth Rayar, Anita Maria Barigye, Stephen J. Jorge Rodríguez, María Elisa Sylla-Iyarreta Veitía, Maité Int J Mol Sci Article A quantitative structure-activity relationship (QSAR) study of the 2,2-diphenyl-l-picrylhydrazyl (DPPH•) radical scavenging ability of 1373 chemical compounds, using DRAGON molecular descriptors (MD) and the neural network technique, a technique based on the multilayer multilayer perceptron (MLP), was developed. The built model demonstrated a satisfactory performance for the training [Formula: see text] and test set [Formula: see text] , respectively. To gain greater insight on the relevance of the MD contained in the MLP model, sensitivity and principal component analyses were performed. Moreover, structural and mechanistic interpretation was carried out to comprehend the relationship of the variables in the model with the modeled property. The constructed MLP model was employed to predict the radical scavenging ability for a group of coumarin-type compounds. Finally, in order to validate the model’s predictions, an in vitro assay for one of the compounds (4-hydroxycoumarin) was performed, showing a satisfactory proximity between the experimental and predicted pIC(50) values. MDPI 2016-06-07 /pmc/articles/PMC4926415/ /pubmed/27338348 http://dx.doi.org/10.3390/ijms17060881 Text en © 2016 by the authors; licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC-BY) license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Goya Jorge, Elizabeth
Rayar, Anita Maria
Barigye, Stephen J.
Jorge Rodríguez, María Elisa
Sylla-Iyarreta Veitía, Maité
Development of an in Silico Model of DPPH• Free Radical Scavenging Capacity: Prediction of Antioxidant Activity of Coumarin Type Compounds
title Development of an in Silico Model of DPPH• Free Radical Scavenging Capacity: Prediction of Antioxidant Activity of Coumarin Type Compounds
title_full Development of an in Silico Model of DPPH• Free Radical Scavenging Capacity: Prediction of Antioxidant Activity of Coumarin Type Compounds
title_fullStr Development of an in Silico Model of DPPH• Free Radical Scavenging Capacity: Prediction of Antioxidant Activity of Coumarin Type Compounds
title_full_unstemmed Development of an in Silico Model of DPPH• Free Radical Scavenging Capacity: Prediction of Antioxidant Activity of Coumarin Type Compounds
title_short Development of an in Silico Model of DPPH• Free Radical Scavenging Capacity: Prediction of Antioxidant Activity of Coumarin Type Compounds
title_sort development of an in silico model of dpph• free radical scavenging capacity: prediction of antioxidant activity of coumarin type compounds
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4926415/
https://www.ncbi.nlm.nih.gov/pubmed/27338348
http://dx.doi.org/10.3390/ijms17060881
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