Cargando…
Proteomic Analysis of Vitreous Humor in Retinal Vein Occlusion
PURPOSE: To analyze the protein profile of human vitreous of untreated patients with retinal vein occlusion (RVO). METHODS: Sixty-eight vitreous humor (VH) samples (44 from patients with treatment naïve RVO, 24 controls with idiopathic floaters) were analyzed in this clinical-experimental study usin...
Autores principales: | , , , , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2016
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4928959/ https://www.ncbi.nlm.nih.gov/pubmed/27362861 http://dx.doi.org/10.1371/journal.pone.0158001 |
_version_ | 1782440530634866688 |
---|---|
author | Reich, Michael Dacheva, Ivanka Nobl, Matthias Siwy, Justyna Schanstra, Joost P. Mullen, William Koch, Frank H. J. Kopitz, Jürgen Kretz, Florian T. A. Auffarth, Gerd U. Koss, Michael J. |
author_facet | Reich, Michael Dacheva, Ivanka Nobl, Matthias Siwy, Justyna Schanstra, Joost P. Mullen, William Koch, Frank H. J. Kopitz, Jürgen Kretz, Florian T. A. Auffarth, Gerd U. Koss, Michael J. |
author_sort | Reich, Michael |
collection | PubMed |
description | PURPOSE: To analyze the protein profile of human vitreous of untreated patients with retinal vein occlusion (RVO). METHODS: Sixty-eight vitreous humor (VH) samples (44 from patients with treatment naïve RVO, 24 controls with idiopathic floaters) were analyzed in this clinical-experimental study using capillary electrophoresis coupled to mass spectrometer and tandem mass spectrometry. To define potential candidate protein markers of RVO, proteomic analysis was performed on RVO patients (n = 30) and compared with controls (n = 16). To determine validity of potential biomarker candidates in RVO, receiver operating characteristic (ROC) was performed by using proteome data of independent RVO (n = 14) and control samples (n = 8). RESULTS: Ninety-four different proteins (736 tryptic peptides) could be identified. Sixteen proteins were found to be significant when comparing RVO and control samples (P = 1.43E-05 to 4.48E-02). Five proteins (Clusterin, Complement C3, Ig lambda-like polypeptide 5 (IGLL5), Opticin and Vitronectin), remained significant after using correction for multiple testing. These five proteins were also detected significant when comparing subgroups of RVO (central RVO, hemi-central RVO, branch RVO) to controls. Using independent samples ROC-Area under the curve was determined proving the validity of the results: Clusterin 0.884, Complement C3 0.955, IGLL5 1.000, Opticin 0.741, Vitronectin 0.786. In addition, validation through ELISA measurements was performed. CONCLUSION: The results of the study reveal that the proteomic composition of VH differed significantly between the patients with RVO and the controls. The proteins identified may serve as potential biomarkers for pathogenesis induced by RVO. |
format | Online Article Text |
id | pubmed-4928959 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-49289592016-07-18 Proteomic Analysis of Vitreous Humor in Retinal Vein Occlusion Reich, Michael Dacheva, Ivanka Nobl, Matthias Siwy, Justyna Schanstra, Joost P. Mullen, William Koch, Frank H. J. Kopitz, Jürgen Kretz, Florian T. A. Auffarth, Gerd U. Koss, Michael J. PLoS One Research Article PURPOSE: To analyze the protein profile of human vitreous of untreated patients with retinal vein occlusion (RVO). METHODS: Sixty-eight vitreous humor (VH) samples (44 from patients with treatment naïve RVO, 24 controls with idiopathic floaters) were analyzed in this clinical-experimental study using capillary electrophoresis coupled to mass spectrometer and tandem mass spectrometry. To define potential candidate protein markers of RVO, proteomic analysis was performed on RVO patients (n = 30) and compared with controls (n = 16). To determine validity of potential biomarker candidates in RVO, receiver operating characteristic (ROC) was performed by using proteome data of independent RVO (n = 14) and control samples (n = 8). RESULTS: Ninety-four different proteins (736 tryptic peptides) could be identified. Sixteen proteins were found to be significant when comparing RVO and control samples (P = 1.43E-05 to 4.48E-02). Five proteins (Clusterin, Complement C3, Ig lambda-like polypeptide 5 (IGLL5), Opticin and Vitronectin), remained significant after using correction for multiple testing. These five proteins were also detected significant when comparing subgroups of RVO (central RVO, hemi-central RVO, branch RVO) to controls. Using independent samples ROC-Area under the curve was determined proving the validity of the results: Clusterin 0.884, Complement C3 0.955, IGLL5 1.000, Opticin 0.741, Vitronectin 0.786. In addition, validation through ELISA measurements was performed. CONCLUSION: The results of the study reveal that the proteomic composition of VH differed significantly between the patients with RVO and the controls. The proteins identified may serve as potential biomarkers for pathogenesis induced by RVO. Public Library of Science 2016-06-30 /pmc/articles/PMC4928959/ /pubmed/27362861 http://dx.doi.org/10.1371/journal.pone.0158001 Text en © 2016 Reich et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Article Reich, Michael Dacheva, Ivanka Nobl, Matthias Siwy, Justyna Schanstra, Joost P. Mullen, William Koch, Frank H. J. Kopitz, Jürgen Kretz, Florian T. A. Auffarth, Gerd U. Koss, Michael J. Proteomic Analysis of Vitreous Humor in Retinal Vein Occlusion |
title | Proteomic Analysis of Vitreous Humor in Retinal Vein Occlusion |
title_full | Proteomic Analysis of Vitreous Humor in Retinal Vein Occlusion |
title_fullStr | Proteomic Analysis of Vitreous Humor in Retinal Vein Occlusion |
title_full_unstemmed | Proteomic Analysis of Vitreous Humor in Retinal Vein Occlusion |
title_short | Proteomic Analysis of Vitreous Humor in Retinal Vein Occlusion |
title_sort | proteomic analysis of vitreous humor in retinal vein occlusion |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4928959/ https://www.ncbi.nlm.nih.gov/pubmed/27362861 http://dx.doi.org/10.1371/journal.pone.0158001 |
work_keys_str_mv | AT reichmichael proteomicanalysisofvitreoushumorinretinalveinocclusion AT dachevaivanka proteomicanalysisofvitreoushumorinretinalveinocclusion AT noblmatthias proteomicanalysisofvitreoushumorinretinalveinocclusion AT siwyjustyna proteomicanalysisofvitreoushumorinretinalveinocclusion AT schanstrajoostp proteomicanalysisofvitreoushumorinretinalveinocclusion AT mullenwilliam proteomicanalysisofvitreoushumorinretinalveinocclusion AT kochfrankhj proteomicanalysisofvitreoushumorinretinalveinocclusion AT kopitzjurgen proteomicanalysisofvitreoushumorinretinalveinocclusion AT kretzflorianta proteomicanalysisofvitreoushumorinretinalveinocclusion AT auffarthgerdu proteomicanalysisofvitreoushumorinretinalveinocclusion AT kossmichaelj proteomicanalysisofvitreoushumorinretinalveinocclusion |