Cargando…
A Multi-Step miRNA-mRNA Regulatory Network Construction Approach Identifies Gene Signatures Associated with Endometrioid Endometrial Carcinoma
We aimed to identify endometrioid endometrial carcinoma (EEC)-related gene signatures using a multi-step miRNA-mRNA regulatory network construction approach. Pathway analysis showed that 61 genes were enriched on many carcinoma-related pathways. Among the 14 highest scoring gene signatures, six gene...
Autores principales: | , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2016
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4929425/ https://www.ncbi.nlm.nih.gov/pubmed/27271671 http://dx.doi.org/10.3390/genes7060026 |
_version_ | 1782440605449715712 |
---|---|
author | Xiong, Hanzhen Li, Qiulian Chen, Ruichao Liu, Shaoyan Lin, Qiongyan Xiong, Zhongtang Jiang, Qingping Guo, Linlang |
author_facet | Xiong, Hanzhen Li, Qiulian Chen, Ruichao Liu, Shaoyan Lin, Qiongyan Xiong, Zhongtang Jiang, Qingping Guo, Linlang |
author_sort | Xiong, Hanzhen |
collection | PubMed |
description | We aimed to identify endometrioid endometrial carcinoma (EEC)-related gene signatures using a multi-step miRNA-mRNA regulatory network construction approach. Pathway analysis showed that 61 genes were enriched on many carcinoma-related pathways. Among the 14 highest scoring gene signatures, six genes had been previously shown to be endometrial carcinoma. By qRT-PCR and next generation sequencing, we found that a gene signature (CPEB1) was significantly down-regulated in EEC tissues, which may be caused by hsa-miR-183-5p up-regulation. In addition, our literature surveys suggested that CPEB1 may play an important role in EEC pathogenesis by regulating the EMT/p53 pathway. The miRNA-mRNA network is worthy of further investigation with respect to the regulatory mechanisms of miRNAs in EEC. CPEB1 appeared to be a tumor suppressor in EEC. Our results provided valuable guidance for the functional study at the cellular level, as well as the EEC mouse models. |
format | Online Article Text |
id | pubmed-4929425 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-49294252016-07-07 A Multi-Step miRNA-mRNA Regulatory Network Construction Approach Identifies Gene Signatures Associated with Endometrioid Endometrial Carcinoma Xiong, Hanzhen Li, Qiulian Chen, Ruichao Liu, Shaoyan Lin, Qiongyan Xiong, Zhongtang Jiang, Qingping Guo, Linlang Genes (Basel) Article We aimed to identify endometrioid endometrial carcinoma (EEC)-related gene signatures using a multi-step miRNA-mRNA regulatory network construction approach. Pathway analysis showed that 61 genes were enriched on many carcinoma-related pathways. Among the 14 highest scoring gene signatures, six genes had been previously shown to be endometrial carcinoma. By qRT-PCR and next generation sequencing, we found that a gene signature (CPEB1) was significantly down-regulated in EEC tissues, which may be caused by hsa-miR-183-5p up-regulation. In addition, our literature surveys suggested that CPEB1 may play an important role in EEC pathogenesis by regulating the EMT/p53 pathway. The miRNA-mRNA network is worthy of further investigation with respect to the regulatory mechanisms of miRNAs in EEC. CPEB1 appeared to be a tumor suppressor in EEC. Our results provided valuable guidance for the functional study at the cellular level, as well as the EEC mouse models. MDPI 2016-06-02 /pmc/articles/PMC4929425/ /pubmed/27271671 http://dx.doi.org/10.3390/genes7060026 Text en © 2016 by the authors; licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC-BY) license (http://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Xiong, Hanzhen Li, Qiulian Chen, Ruichao Liu, Shaoyan Lin, Qiongyan Xiong, Zhongtang Jiang, Qingping Guo, Linlang A Multi-Step miRNA-mRNA Regulatory Network Construction Approach Identifies Gene Signatures Associated with Endometrioid Endometrial Carcinoma |
title | A Multi-Step miRNA-mRNA Regulatory Network Construction Approach Identifies Gene Signatures Associated with Endometrioid Endometrial Carcinoma |
title_full | A Multi-Step miRNA-mRNA Regulatory Network Construction Approach Identifies Gene Signatures Associated with Endometrioid Endometrial Carcinoma |
title_fullStr | A Multi-Step miRNA-mRNA Regulatory Network Construction Approach Identifies Gene Signatures Associated with Endometrioid Endometrial Carcinoma |
title_full_unstemmed | A Multi-Step miRNA-mRNA Regulatory Network Construction Approach Identifies Gene Signatures Associated with Endometrioid Endometrial Carcinoma |
title_short | A Multi-Step miRNA-mRNA Regulatory Network Construction Approach Identifies Gene Signatures Associated with Endometrioid Endometrial Carcinoma |
title_sort | multi-step mirna-mrna regulatory network construction approach identifies gene signatures associated with endometrioid endometrial carcinoma |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4929425/ https://www.ncbi.nlm.nih.gov/pubmed/27271671 http://dx.doi.org/10.3390/genes7060026 |
work_keys_str_mv | AT xionghanzhen amultistepmirnamrnaregulatorynetworkconstructionapproachidentifiesgenesignaturesassociatedwithendometrioidendometrialcarcinoma AT liqiulian amultistepmirnamrnaregulatorynetworkconstructionapproachidentifiesgenesignaturesassociatedwithendometrioidendometrialcarcinoma AT chenruichao amultistepmirnamrnaregulatorynetworkconstructionapproachidentifiesgenesignaturesassociatedwithendometrioidendometrialcarcinoma AT liushaoyan amultistepmirnamrnaregulatorynetworkconstructionapproachidentifiesgenesignaturesassociatedwithendometrioidendometrialcarcinoma AT linqiongyan amultistepmirnamrnaregulatorynetworkconstructionapproachidentifiesgenesignaturesassociatedwithendometrioidendometrialcarcinoma AT xiongzhongtang amultistepmirnamrnaregulatorynetworkconstructionapproachidentifiesgenesignaturesassociatedwithendometrioidendometrialcarcinoma AT jiangqingping amultistepmirnamrnaregulatorynetworkconstructionapproachidentifiesgenesignaturesassociatedwithendometrioidendometrialcarcinoma AT guolinlang amultistepmirnamrnaregulatorynetworkconstructionapproachidentifiesgenesignaturesassociatedwithendometrioidendometrialcarcinoma AT xionghanzhen multistepmirnamrnaregulatorynetworkconstructionapproachidentifiesgenesignaturesassociatedwithendometrioidendometrialcarcinoma AT liqiulian multistepmirnamrnaregulatorynetworkconstructionapproachidentifiesgenesignaturesassociatedwithendometrioidendometrialcarcinoma AT chenruichao multistepmirnamrnaregulatorynetworkconstructionapproachidentifiesgenesignaturesassociatedwithendometrioidendometrialcarcinoma AT liushaoyan multistepmirnamrnaregulatorynetworkconstructionapproachidentifiesgenesignaturesassociatedwithendometrioidendometrialcarcinoma AT linqiongyan multistepmirnamrnaregulatorynetworkconstructionapproachidentifiesgenesignaturesassociatedwithendometrioidendometrialcarcinoma AT xiongzhongtang multistepmirnamrnaregulatorynetworkconstructionapproachidentifiesgenesignaturesassociatedwithendometrioidendometrialcarcinoma AT jiangqingping multistepmirnamrnaregulatorynetworkconstructionapproachidentifiesgenesignaturesassociatedwithendometrioidendometrialcarcinoma AT guolinlang multistepmirnamrnaregulatorynetworkconstructionapproachidentifiesgenesignaturesassociatedwithendometrioidendometrialcarcinoma |