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Arginine demethylation is catalysed by a subset of JmjC histone lysine demethylases

While the oxygen-dependent reversal of lysine N(ɛ)-methylation is well established, the existence of bona fide N(ω)-methylarginine demethylases (RDMs) is controversial. Lysine demethylation, as catalysed by two families of lysine demethylases (the flavin-dependent KDM1 enzymes and the 2-oxoglutarate...

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Autores principales: Walport, Louise J., Hopkinson, Richard J., Chowdhury, Rasheduzzaman, Schiller, Rachel, Ge, Wei, Kawamura, Akane, Schofield, Christopher J.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4931022/
https://www.ncbi.nlm.nih.gov/pubmed/27337104
http://dx.doi.org/10.1038/ncomms11974
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author Walport, Louise J.
Hopkinson, Richard J.
Chowdhury, Rasheduzzaman
Schiller, Rachel
Ge, Wei
Kawamura, Akane
Schofield, Christopher J.
author_facet Walport, Louise J.
Hopkinson, Richard J.
Chowdhury, Rasheduzzaman
Schiller, Rachel
Ge, Wei
Kawamura, Akane
Schofield, Christopher J.
author_sort Walport, Louise J.
collection PubMed
description While the oxygen-dependent reversal of lysine N(ɛ)-methylation is well established, the existence of bona fide N(ω)-methylarginine demethylases (RDMs) is controversial. Lysine demethylation, as catalysed by two families of lysine demethylases (the flavin-dependent KDM1 enzymes and the 2-oxoglutarate- and oxygen-dependent JmjC KDMs, respectively), proceeds via oxidation of the N-methyl group, resulting in the release of formaldehyde. Here we report detailed biochemical studies clearly demonstrating that, in purified form, a subset of JmjC KDMs can also act as RDMs, both on histone and non-histone fragments, resulting in formaldehyde release. RDM catalysis is studied using peptides of wild-type sequences known to be arginine-methylated and sequences in which the KDM's methylated target lysine is substituted for a methylated arginine. Notably, the preferred sequence requirements for KDM and RDM activity vary even with the same JmjC enzymes. The demonstration of RDM activity by isolated JmjC enzymes will stimulate efforts to detect biologically relevant RDM activity.
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spelling pubmed-49310222016-07-12 Arginine demethylation is catalysed by a subset of JmjC histone lysine demethylases Walport, Louise J. Hopkinson, Richard J. Chowdhury, Rasheduzzaman Schiller, Rachel Ge, Wei Kawamura, Akane Schofield, Christopher J. Nat Commun Article While the oxygen-dependent reversal of lysine N(ɛ)-methylation is well established, the existence of bona fide N(ω)-methylarginine demethylases (RDMs) is controversial. Lysine demethylation, as catalysed by two families of lysine demethylases (the flavin-dependent KDM1 enzymes and the 2-oxoglutarate- and oxygen-dependent JmjC KDMs, respectively), proceeds via oxidation of the N-methyl group, resulting in the release of formaldehyde. Here we report detailed biochemical studies clearly demonstrating that, in purified form, a subset of JmjC KDMs can also act as RDMs, both on histone and non-histone fragments, resulting in formaldehyde release. RDM catalysis is studied using peptides of wild-type sequences known to be arginine-methylated and sequences in which the KDM's methylated target lysine is substituted for a methylated arginine. Notably, the preferred sequence requirements for KDM and RDM activity vary even with the same JmjC enzymes. The demonstration of RDM activity by isolated JmjC enzymes will stimulate efforts to detect biologically relevant RDM activity. Nature Publishing Group 2016-06-23 /pmc/articles/PMC4931022/ /pubmed/27337104 http://dx.doi.org/10.1038/ncomms11974 Text en Copyright © 2016, Nature Publishing Group, a division of Macmillan Publishers Limited. All Rights Reserved. http://creativecommons.org/licenses/by/4.0/ This work is licensed under a Creative Commons Attribution 4.0 International License. The images or other third party material in this article are included in the article's Creative Commons license, unless indicated otherwise in the credit line; if the material is not included under the Creative Commons license, users will need to obtain permission from the license holder to reproduce the material. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/
spellingShingle Article
Walport, Louise J.
Hopkinson, Richard J.
Chowdhury, Rasheduzzaman
Schiller, Rachel
Ge, Wei
Kawamura, Akane
Schofield, Christopher J.
Arginine demethylation is catalysed by a subset of JmjC histone lysine demethylases
title Arginine demethylation is catalysed by a subset of JmjC histone lysine demethylases
title_full Arginine demethylation is catalysed by a subset of JmjC histone lysine demethylases
title_fullStr Arginine demethylation is catalysed by a subset of JmjC histone lysine demethylases
title_full_unstemmed Arginine demethylation is catalysed by a subset of JmjC histone lysine demethylases
title_short Arginine demethylation is catalysed by a subset of JmjC histone lysine demethylases
title_sort arginine demethylation is catalysed by a subset of jmjc histone lysine demethylases
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4931022/
https://www.ncbi.nlm.nih.gov/pubmed/27337104
http://dx.doi.org/10.1038/ncomms11974
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