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Complete genome sequencing and comparative genomic analysis of functionally diverse Lysinibacillus sphaericus III(3)7

Lysinibacillus sphaericus III(3)7 is a native Colombian strain, the first one isolated from soil samples. This strain has shown high levels of pathogenic activity against Culex quinquefaciatus larvae in laboratory assays compared to other members of the same species. Using Pacific Biosciences sequen...

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Autores principales: Rey, Andrés, Silva-Quintero, Laura, Dussán, Jenny
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4932437/
https://www.ncbi.nlm.nih.gov/pubmed/27419068
http://dx.doi.org/10.1016/j.gdata.2016.06.002
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author Rey, Andrés
Silva-Quintero, Laura
Dussán, Jenny
author_facet Rey, Andrés
Silva-Quintero, Laura
Dussán, Jenny
author_sort Rey, Andrés
collection PubMed
description Lysinibacillus sphaericus III(3)7 is a native Colombian strain, the first one isolated from soil samples. This strain has shown high levels of pathogenic activity against Culex quinquefaciatus larvae in laboratory assays compared to other members of the same species. Using Pacific Biosciences sequencing technology we sequenced, annotated (de novo) and described the genome of strain III(3)7, achieving a complete genome sequence status. We then performed a comparative analysis between the newly sequenced genome and the ones previously reported for Colombian isolates L. sphaericus OT4b.31, CBAM5 and OT4b.25, with the inclusion of L. sphaericus C3-41 that has been used as a reference genome for most of previous genome sequencing projects. We concluded that L. sphaericus III(3)7 is highly similar with strain OT4b.25 and shares high levels of synteny with isolates CBAM5 and C3-41.
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spelling pubmed-49324372016-07-14 Complete genome sequencing and comparative genomic analysis of functionally diverse Lysinibacillus sphaericus III(3)7 Rey, Andrés Silva-Quintero, Laura Dussán, Jenny Genom Data Data in Brief Lysinibacillus sphaericus III(3)7 is a native Colombian strain, the first one isolated from soil samples. This strain has shown high levels of pathogenic activity against Culex quinquefaciatus larvae in laboratory assays compared to other members of the same species. Using Pacific Biosciences sequencing technology we sequenced, annotated (de novo) and described the genome of strain III(3)7, achieving a complete genome sequence status. We then performed a comparative analysis between the newly sequenced genome and the ones previously reported for Colombian isolates L. sphaericus OT4b.31, CBAM5 and OT4b.25, with the inclusion of L. sphaericus C3-41 that has been used as a reference genome for most of previous genome sequencing projects. We concluded that L. sphaericus III(3)7 is highly similar with strain OT4b.25 and shares high levels of synteny with isolates CBAM5 and C3-41. Elsevier 2016-06-26 /pmc/articles/PMC4932437/ /pubmed/27419068 http://dx.doi.org/10.1016/j.gdata.2016.06.002 Text en © 2016 Asbestos Diseases Research Institute, Sydney Australia http://creativecommons.org/licenses/by-nc-nd/4.0/ This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).
spellingShingle Data in Brief
Rey, Andrés
Silva-Quintero, Laura
Dussán, Jenny
Complete genome sequencing and comparative genomic analysis of functionally diverse Lysinibacillus sphaericus III(3)7
title Complete genome sequencing and comparative genomic analysis of functionally diverse Lysinibacillus sphaericus III(3)7
title_full Complete genome sequencing and comparative genomic analysis of functionally diverse Lysinibacillus sphaericus III(3)7
title_fullStr Complete genome sequencing and comparative genomic analysis of functionally diverse Lysinibacillus sphaericus III(3)7
title_full_unstemmed Complete genome sequencing and comparative genomic analysis of functionally diverse Lysinibacillus sphaericus III(3)7
title_short Complete genome sequencing and comparative genomic analysis of functionally diverse Lysinibacillus sphaericus III(3)7
title_sort complete genome sequencing and comparative genomic analysis of functionally diverse lysinibacillus sphaericus iii(3)7
topic Data in Brief
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4932437/
https://www.ncbi.nlm.nih.gov/pubmed/27419068
http://dx.doi.org/10.1016/j.gdata.2016.06.002
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