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Complete genome sequencing and comparative genomic analysis of functionally diverse Lysinibacillus sphaericus III(3)7
Lysinibacillus sphaericus III(3)7 is a native Colombian strain, the first one isolated from soil samples. This strain has shown high levels of pathogenic activity against Culex quinquefaciatus larvae in laboratory assays compared to other members of the same species. Using Pacific Biosciences sequen...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Elsevier
2016
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4932437/ https://www.ncbi.nlm.nih.gov/pubmed/27419068 http://dx.doi.org/10.1016/j.gdata.2016.06.002 |
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author | Rey, Andrés Silva-Quintero, Laura Dussán, Jenny |
author_facet | Rey, Andrés Silva-Quintero, Laura Dussán, Jenny |
author_sort | Rey, Andrés |
collection | PubMed |
description | Lysinibacillus sphaericus III(3)7 is a native Colombian strain, the first one isolated from soil samples. This strain has shown high levels of pathogenic activity against Culex quinquefaciatus larvae in laboratory assays compared to other members of the same species. Using Pacific Biosciences sequencing technology we sequenced, annotated (de novo) and described the genome of strain III(3)7, achieving a complete genome sequence status. We then performed a comparative analysis between the newly sequenced genome and the ones previously reported for Colombian isolates L. sphaericus OT4b.31, CBAM5 and OT4b.25, with the inclusion of L. sphaericus C3-41 that has been used as a reference genome for most of previous genome sequencing projects. We concluded that L. sphaericus III(3)7 is highly similar with strain OT4b.25 and shares high levels of synteny with isolates CBAM5 and C3-41. |
format | Online Article Text |
id | pubmed-4932437 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | Elsevier |
record_format | MEDLINE/PubMed |
spelling | pubmed-49324372016-07-14 Complete genome sequencing and comparative genomic analysis of functionally diverse Lysinibacillus sphaericus III(3)7 Rey, Andrés Silva-Quintero, Laura Dussán, Jenny Genom Data Data in Brief Lysinibacillus sphaericus III(3)7 is a native Colombian strain, the first one isolated from soil samples. This strain has shown high levels of pathogenic activity against Culex quinquefaciatus larvae in laboratory assays compared to other members of the same species. Using Pacific Biosciences sequencing technology we sequenced, annotated (de novo) and described the genome of strain III(3)7, achieving a complete genome sequence status. We then performed a comparative analysis between the newly sequenced genome and the ones previously reported for Colombian isolates L. sphaericus OT4b.31, CBAM5 and OT4b.25, with the inclusion of L. sphaericus C3-41 that has been used as a reference genome for most of previous genome sequencing projects. We concluded that L. sphaericus III(3)7 is highly similar with strain OT4b.25 and shares high levels of synteny with isolates CBAM5 and C3-41. Elsevier 2016-06-26 /pmc/articles/PMC4932437/ /pubmed/27419068 http://dx.doi.org/10.1016/j.gdata.2016.06.002 Text en © 2016 Asbestos Diseases Research Institute, Sydney Australia http://creativecommons.org/licenses/by-nc-nd/4.0/ This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/). |
spellingShingle | Data in Brief Rey, Andrés Silva-Quintero, Laura Dussán, Jenny Complete genome sequencing and comparative genomic analysis of functionally diverse Lysinibacillus sphaericus III(3)7 |
title | Complete genome sequencing and comparative genomic analysis of functionally diverse Lysinibacillus sphaericus III(3)7 |
title_full | Complete genome sequencing and comparative genomic analysis of functionally diverse Lysinibacillus sphaericus III(3)7 |
title_fullStr | Complete genome sequencing and comparative genomic analysis of functionally diverse Lysinibacillus sphaericus III(3)7 |
title_full_unstemmed | Complete genome sequencing and comparative genomic analysis of functionally diverse Lysinibacillus sphaericus III(3)7 |
title_short | Complete genome sequencing and comparative genomic analysis of functionally diverse Lysinibacillus sphaericus III(3)7 |
title_sort | complete genome sequencing and comparative genomic analysis of functionally diverse lysinibacillus sphaericus iii(3)7 |
topic | Data in Brief |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4932437/ https://www.ncbi.nlm.nih.gov/pubmed/27419068 http://dx.doi.org/10.1016/j.gdata.2016.06.002 |
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