Cargando…
A catalogue of 136 microbial draft genomes from Red Sea metagenomes
Earth is expected to continue warming and the Red Sea is a model environment for understanding the effects of global warming on ocean microbiomes due to its unusually high temperature, salinity and solar irradiance. However, most microbial diversity analyses of the Red Sea have been limited to cultu...
Autores principales: | , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group
2016
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4932879/ https://www.ncbi.nlm.nih.gov/pubmed/27377622 http://dx.doi.org/10.1038/sdata.2016.50 |
_version_ | 1782441138530025472 |
---|---|
author | Haroon, Mohamed F. Thompson, Luke R. Parks, Donovan H. Hugenholtz, Philip Stingl, Ulrich |
author_facet | Haroon, Mohamed F. Thompson, Luke R. Parks, Donovan H. Hugenholtz, Philip Stingl, Ulrich |
author_sort | Haroon, Mohamed F. |
collection | PubMed |
description | Earth is expected to continue warming and the Red Sea is a model environment for understanding the effects of global warming on ocean microbiomes due to its unusually high temperature, salinity and solar irradiance. However, most microbial diversity analyses of the Red Sea have been limited to cultured representatives and single marker gene analyses, hence neglecting the substantial uncultured majority. Here, we report 136 microbial genomes (completion minus contamination is ≥50%) assembled from 45 metagenomes from eight stations spanning the Red Sea and taken from multiple depths between 10 to 500 m. Phylogenomic analysis showed that most of the retrieved genomes belong to seven different phyla of known marine microbes, but more than half representing currently uncultured species. The open-access data presented here is the largest number of Red Sea representative microbial genomes reported in a single study and will help facilitate future studies in understanding the physiology of these microorganisms and how they have adapted to the relatively harsh conditions of the Red Sea. |
format | Online Article Text |
id | pubmed-4932879 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | Nature Publishing Group |
record_format | MEDLINE/PubMed |
spelling | pubmed-49328792016-07-08 A catalogue of 136 microbial draft genomes from Red Sea metagenomes Haroon, Mohamed F. Thompson, Luke R. Parks, Donovan H. Hugenholtz, Philip Stingl, Ulrich Sci Data Data Descriptor Earth is expected to continue warming and the Red Sea is a model environment for understanding the effects of global warming on ocean microbiomes due to its unusually high temperature, salinity and solar irradiance. However, most microbial diversity analyses of the Red Sea have been limited to cultured representatives and single marker gene analyses, hence neglecting the substantial uncultured majority. Here, we report 136 microbial genomes (completion minus contamination is ≥50%) assembled from 45 metagenomes from eight stations spanning the Red Sea and taken from multiple depths between 10 to 500 m. Phylogenomic analysis showed that most of the retrieved genomes belong to seven different phyla of known marine microbes, but more than half representing currently uncultured species. The open-access data presented here is the largest number of Red Sea representative microbial genomes reported in a single study and will help facilitate future studies in understanding the physiology of these microorganisms and how they have adapted to the relatively harsh conditions of the Red Sea. Nature Publishing Group 2016-07-05 /pmc/articles/PMC4932879/ /pubmed/27377622 http://dx.doi.org/10.1038/sdata.2016.50 Text en Copyright © 2016, Macmillan Publishers Limited http://creativecommons.org/licenses/by/4.0 This work is licensed under a Creative Commons Attribution 4.0 International License. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in the credit line; if the material is not included under the Creative Commons license, users will need to obtain permission from the license holder to reproduce the material. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0 Metadata associated with this Data Descriptor is available at http://www.nature.com/sdata/ and is released under the CC0 waiver to maximize reuse. |
spellingShingle | Data Descriptor Haroon, Mohamed F. Thompson, Luke R. Parks, Donovan H. Hugenholtz, Philip Stingl, Ulrich A catalogue of 136 microbial draft genomes from Red Sea metagenomes |
title | A catalogue of 136 microbial draft genomes from Red Sea metagenomes |
title_full | A catalogue of 136 microbial draft genomes from Red Sea metagenomes |
title_fullStr | A catalogue of 136 microbial draft genomes from Red Sea metagenomes |
title_full_unstemmed | A catalogue of 136 microbial draft genomes from Red Sea metagenomes |
title_short | A catalogue of 136 microbial draft genomes from Red Sea metagenomes |
title_sort | catalogue of 136 microbial draft genomes from red sea metagenomes |
topic | Data Descriptor |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4932879/ https://www.ncbi.nlm.nih.gov/pubmed/27377622 http://dx.doi.org/10.1038/sdata.2016.50 |
work_keys_str_mv | AT haroonmohamedf acatalogueof136microbialdraftgenomesfromredseametagenomes AT thompsonluker acatalogueof136microbialdraftgenomesfromredseametagenomes AT parksdonovanh acatalogueof136microbialdraftgenomesfromredseametagenomes AT hugenholtzphilip acatalogueof136microbialdraftgenomesfromredseametagenomes AT stinglulrich acatalogueof136microbialdraftgenomesfromredseametagenomes AT haroonmohamedf catalogueof136microbialdraftgenomesfromredseametagenomes AT thompsonluker catalogueof136microbialdraftgenomesfromredseametagenomes AT parksdonovanh catalogueof136microbialdraftgenomesfromredseametagenomes AT hugenholtzphilip catalogueof136microbialdraftgenomesfromredseametagenomes AT stinglulrich catalogueof136microbialdraftgenomesfromredseametagenomes |