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Detecting Causality by Combined Use of Multiple Methods: Climate and Brain Examples

Identifying causal relations from time series is the first step to understanding the behavior of complex systems. Although many methods have been proposed, few papers have applied multiple methods together to detect causal relations based on time series generated from coupled nonlinear systems with...

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Autores principales: Hirata, Yoshito, Amigó, José M., Matsuzaka, Yoshiya, Yokota, Ryo, Mushiake, Hajime, Aihara, Kazuyuki
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4933387/
https://www.ncbi.nlm.nih.gov/pubmed/27380515
http://dx.doi.org/10.1371/journal.pone.0158572
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author Hirata, Yoshito
Amigó, José M.
Matsuzaka, Yoshiya
Yokota, Ryo
Mushiake, Hajime
Aihara, Kazuyuki
author_facet Hirata, Yoshito
Amigó, José M.
Matsuzaka, Yoshiya
Yokota, Ryo
Mushiake, Hajime
Aihara, Kazuyuki
author_sort Hirata, Yoshito
collection PubMed
description Identifying causal relations from time series is the first step to understanding the behavior of complex systems. Although many methods have been proposed, few papers have applied multiple methods together to detect causal relations based on time series generated from coupled nonlinear systems with some unobserved parts. Here we propose the combined use of three methods and a majority vote to infer causality under such circumstances. Two of these methods are proposed here for the first time, and all of the three methods can be applied even if the underlying dynamics is nonlinear and there are hidden common causes. We test our methods with coupled logistic maps, coupled Rössler models, and coupled Lorenz models. In addition, we show from ice core data how the causal relations among the temperature, the CH(4) level, and the CO(2) level in the atmosphere changed in the last 800,000 years, a conclusion also supported by irregularly sampled data analysis. Moreover, these methods show how three regions of the brain interact with each other during the visually cued, two-choice arm reaching task. Especially, we demonstrate that this is due to bottom up influences at the beginning of the task, while there exist mutual influences between the posterior medial prefrontal cortex and the presupplementary motor area. Based on our results, we conclude that identifying causality with an appropriate ensemble of multiple methods ensures the validity of the obtained results more firmly.
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spelling pubmed-49333872016-07-18 Detecting Causality by Combined Use of Multiple Methods: Climate and Brain Examples Hirata, Yoshito Amigó, José M. Matsuzaka, Yoshiya Yokota, Ryo Mushiake, Hajime Aihara, Kazuyuki PLoS One Research Article Identifying causal relations from time series is the first step to understanding the behavior of complex systems. Although many methods have been proposed, few papers have applied multiple methods together to detect causal relations based on time series generated from coupled nonlinear systems with some unobserved parts. Here we propose the combined use of three methods and a majority vote to infer causality under such circumstances. Two of these methods are proposed here for the first time, and all of the three methods can be applied even if the underlying dynamics is nonlinear and there are hidden common causes. We test our methods with coupled logistic maps, coupled Rössler models, and coupled Lorenz models. In addition, we show from ice core data how the causal relations among the temperature, the CH(4) level, and the CO(2) level in the atmosphere changed in the last 800,000 years, a conclusion also supported by irregularly sampled data analysis. Moreover, these methods show how three regions of the brain interact with each other during the visually cued, two-choice arm reaching task. Especially, we demonstrate that this is due to bottom up influences at the beginning of the task, while there exist mutual influences between the posterior medial prefrontal cortex and the presupplementary motor area. Based on our results, we conclude that identifying causality with an appropriate ensemble of multiple methods ensures the validity of the obtained results more firmly. Public Library of Science 2016-07-05 /pmc/articles/PMC4933387/ /pubmed/27380515 http://dx.doi.org/10.1371/journal.pone.0158572 Text en © 2016 Hirata et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Hirata, Yoshito
Amigó, José M.
Matsuzaka, Yoshiya
Yokota, Ryo
Mushiake, Hajime
Aihara, Kazuyuki
Detecting Causality by Combined Use of Multiple Methods: Climate and Brain Examples
title Detecting Causality by Combined Use of Multiple Methods: Climate and Brain Examples
title_full Detecting Causality by Combined Use of Multiple Methods: Climate and Brain Examples
title_fullStr Detecting Causality by Combined Use of Multiple Methods: Climate and Brain Examples
title_full_unstemmed Detecting Causality by Combined Use of Multiple Methods: Climate and Brain Examples
title_short Detecting Causality by Combined Use of Multiple Methods: Climate and Brain Examples
title_sort detecting causality by combined use of multiple methods: climate and brain examples
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4933387/
https://www.ncbi.nlm.nih.gov/pubmed/27380515
http://dx.doi.org/10.1371/journal.pone.0158572
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