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regionReport: Interactive reports for region-level and feature-level genomic analyses

regionReport is an R package for generating detailed interactive reports from region-level genomic analyses as well as feature-level RNA-seq. The report includes quality-control checks, an overview of the results, an interactive table of the genomic regions or features of interest and reproducibilit...

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Detalles Bibliográficos
Autores principales: Collado-Torres, Leonardo, Jaffe, Andrew E., Leek, Jeffrey T.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: F1000Research 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4934510/
https://www.ncbi.nlm.nih.gov/pubmed/27429738
http://dx.doi.org/10.12688/f1000research.6379.2
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author Collado-Torres, Leonardo
Jaffe, Andrew E.
Leek, Jeffrey T.
author_facet Collado-Torres, Leonardo
Jaffe, Andrew E.
Leek, Jeffrey T.
author_sort Collado-Torres, Leonardo
collection PubMed
description regionReport is an R package for generating detailed interactive reports from region-level genomic analyses as well as feature-level RNA-seq. The report includes quality-control checks, an overview of the results, an interactive table of the genomic regions or features of interest and reproducibility information. regionReport provides specialised reports for exploring DESeq2, edgeR, or derfinder differential expression analyses results. regionReport is also flexible and can easily be expanded with report templates for other analysis pipelines.
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spelling pubmed-49345102016-07-15 regionReport: Interactive reports for region-level and feature-level genomic analyses Collado-Torres, Leonardo Jaffe, Andrew E. Leek, Jeffrey T. F1000Res Software Tool Article regionReport is an R package for generating detailed interactive reports from region-level genomic analyses as well as feature-level RNA-seq. The report includes quality-control checks, an overview of the results, an interactive table of the genomic regions or features of interest and reproducibility information. regionReport provides specialised reports for exploring DESeq2, edgeR, or derfinder differential expression analyses results. regionReport is also flexible and can easily be expanded with report templates for other analysis pipelines. F1000Research 2016-06-29 /pmc/articles/PMC4934510/ /pubmed/27429738 http://dx.doi.org/10.12688/f1000research.6379.2 Text en Copyright: © 2016 Collado-Torres L et al. http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Software Tool Article
Collado-Torres, Leonardo
Jaffe, Andrew E.
Leek, Jeffrey T.
regionReport: Interactive reports for region-level and feature-level genomic analyses
title regionReport: Interactive reports for region-level and feature-level genomic analyses
title_full regionReport: Interactive reports for region-level and feature-level genomic analyses
title_fullStr regionReport: Interactive reports for region-level and feature-level genomic analyses
title_full_unstemmed regionReport: Interactive reports for region-level and feature-level genomic analyses
title_short regionReport: Interactive reports for region-level and feature-level genomic analyses
title_sort regionreport: interactive reports for region-level and feature-level genomic analyses
topic Software Tool Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4934510/
https://www.ncbi.nlm.nih.gov/pubmed/27429738
http://dx.doi.org/10.12688/f1000research.6379.2
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