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regionReport: Interactive reports for region-level and feature-level genomic analyses
regionReport is an R package for generating detailed interactive reports from region-level genomic analyses as well as feature-level RNA-seq. The report includes quality-control checks, an overview of the results, an interactive table of the genomic regions or features of interest and reproducibilit...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
F1000Research
2016
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4934510/ https://www.ncbi.nlm.nih.gov/pubmed/27429738 http://dx.doi.org/10.12688/f1000research.6379.2 |
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author | Collado-Torres, Leonardo Jaffe, Andrew E. Leek, Jeffrey T. |
author_facet | Collado-Torres, Leonardo Jaffe, Andrew E. Leek, Jeffrey T. |
author_sort | Collado-Torres, Leonardo |
collection | PubMed |
description | regionReport is an R package for generating detailed interactive reports from region-level genomic analyses as well as feature-level RNA-seq. The report includes quality-control checks, an overview of the results, an interactive table of the genomic regions or features of interest and reproducibility information. regionReport provides specialised reports for exploring DESeq2, edgeR, or derfinder differential expression analyses results. regionReport is also flexible and can easily be expanded with report templates for other analysis pipelines. |
format | Online Article Text |
id | pubmed-4934510 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | F1000Research |
record_format | MEDLINE/PubMed |
spelling | pubmed-49345102016-07-15 regionReport: Interactive reports for region-level and feature-level genomic analyses Collado-Torres, Leonardo Jaffe, Andrew E. Leek, Jeffrey T. F1000Res Software Tool Article regionReport is an R package for generating detailed interactive reports from region-level genomic analyses as well as feature-level RNA-seq. The report includes quality-control checks, an overview of the results, an interactive table of the genomic regions or features of interest and reproducibility information. regionReport provides specialised reports for exploring DESeq2, edgeR, or derfinder differential expression analyses results. regionReport is also flexible and can easily be expanded with report templates for other analysis pipelines. F1000Research 2016-06-29 /pmc/articles/PMC4934510/ /pubmed/27429738 http://dx.doi.org/10.12688/f1000research.6379.2 Text en Copyright: © 2016 Collado-Torres L et al. http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Software Tool Article Collado-Torres, Leonardo Jaffe, Andrew E. Leek, Jeffrey T. regionReport: Interactive reports for region-level and feature-level genomic analyses |
title | regionReport: Interactive reports for region-level and feature-level genomic analyses |
title_full | regionReport: Interactive reports for region-level and feature-level genomic analyses |
title_fullStr | regionReport: Interactive reports for region-level and feature-level genomic analyses |
title_full_unstemmed | regionReport: Interactive reports for region-level and feature-level genomic analyses |
title_short | regionReport: Interactive reports for region-level and feature-level genomic analyses |
title_sort | regionreport: interactive reports for region-level and feature-level genomic analyses |
topic | Software Tool Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4934510/ https://www.ncbi.nlm.nih.gov/pubmed/27429738 http://dx.doi.org/10.12688/f1000research.6379.2 |
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