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Next-Generation Sequencing of an 88-Year-Old Specimen of the Poorly Known Species Liagora japonica (Nemaliales, Rhodophyta) Supports the Recognition of Otohimella gen. nov.
Liagora japonica is a red algal species distributed in temperate regions of Japan. This species has not been collected from its type locality on the Pacific coast of Japan since 1927 and seems to have become extinct in this area. For molecular characterization of L. japonica, we extracted DNA from t...
Autores principales: | , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2016
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4936710/ https://www.ncbi.nlm.nih.gov/pubmed/27388436 http://dx.doi.org/10.1371/journal.pone.0158944 |
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author | Suzuki, Masahiro Segawa, Takahiro Mori, Hiroshi Akiyoshi, Ayumi Ootsuki, Ryo Kurihara, Akira Sakayama, Hidetoshi Kitayama, Taiju Abe, Tsuyoshi Kogame, Kazuhiro Kawai, Hiroshi Nozaki, Hisayoshi |
author_facet | Suzuki, Masahiro Segawa, Takahiro Mori, Hiroshi Akiyoshi, Ayumi Ootsuki, Ryo Kurihara, Akira Sakayama, Hidetoshi Kitayama, Taiju Abe, Tsuyoshi Kogame, Kazuhiro Kawai, Hiroshi Nozaki, Hisayoshi |
author_sort | Suzuki, Masahiro |
collection | PubMed |
description | Liagora japonica is a red algal species distributed in temperate regions of Japan. This species has not been collected from its type locality on the Pacific coast of Japan since 1927 and seems to have become extinct in this area. For molecular characterization of L. japonica, we extracted DNA from the topotype material of L. japonica collected in 1927, analyzed seven genes using Illumina next-generation sequencing, and compared these data with sequences from modern samples of similar red algae collected from the Japan Sea coast of Japan. Both morphological and molecular data from modern samples and historical specimens (including the lectotype and topotype) suggest that the specimens from the Pacific and Japan Sea coasts of Japan should be treated as a single species, and that L. japonica is phylogenetically separated from the genus Liagora. Based on the phylogenetic results and examination of reproductive structures, we propose Otohimella japonica gen. et comb. nov., characterized morphologically by diffuse carposporophytes, undivided carposporangia, and involucral filaments initiated only from the cortical cell on the supporting cell. |
format | Online Article Text |
id | pubmed-4936710 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-49367102016-07-22 Next-Generation Sequencing of an 88-Year-Old Specimen of the Poorly Known Species Liagora japonica (Nemaliales, Rhodophyta) Supports the Recognition of Otohimella gen. nov. Suzuki, Masahiro Segawa, Takahiro Mori, Hiroshi Akiyoshi, Ayumi Ootsuki, Ryo Kurihara, Akira Sakayama, Hidetoshi Kitayama, Taiju Abe, Tsuyoshi Kogame, Kazuhiro Kawai, Hiroshi Nozaki, Hisayoshi PLoS One Research Article Liagora japonica is a red algal species distributed in temperate regions of Japan. This species has not been collected from its type locality on the Pacific coast of Japan since 1927 and seems to have become extinct in this area. For molecular characterization of L. japonica, we extracted DNA from the topotype material of L. japonica collected in 1927, analyzed seven genes using Illumina next-generation sequencing, and compared these data with sequences from modern samples of similar red algae collected from the Japan Sea coast of Japan. Both morphological and molecular data from modern samples and historical specimens (including the lectotype and topotype) suggest that the specimens from the Pacific and Japan Sea coasts of Japan should be treated as a single species, and that L. japonica is phylogenetically separated from the genus Liagora. Based on the phylogenetic results and examination of reproductive structures, we propose Otohimella japonica gen. et comb. nov., characterized morphologically by diffuse carposporophytes, undivided carposporangia, and involucral filaments initiated only from the cortical cell on the supporting cell. Public Library of Science 2016-07-07 /pmc/articles/PMC4936710/ /pubmed/27388436 http://dx.doi.org/10.1371/journal.pone.0158944 Text en © 2016 Suzuki et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Article Suzuki, Masahiro Segawa, Takahiro Mori, Hiroshi Akiyoshi, Ayumi Ootsuki, Ryo Kurihara, Akira Sakayama, Hidetoshi Kitayama, Taiju Abe, Tsuyoshi Kogame, Kazuhiro Kawai, Hiroshi Nozaki, Hisayoshi Next-Generation Sequencing of an 88-Year-Old Specimen of the Poorly Known Species Liagora japonica (Nemaliales, Rhodophyta) Supports the Recognition of Otohimella gen. nov. |
title | Next-Generation Sequencing of an 88-Year-Old Specimen of the Poorly Known Species Liagora japonica (Nemaliales, Rhodophyta) Supports the Recognition of Otohimella gen. nov. |
title_full | Next-Generation Sequencing of an 88-Year-Old Specimen of the Poorly Known Species Liagora japonica (Nemaliales, Rhodophyta) Supports the Recognition of Otohimella gen. nov. |
title_fullStr | Next-Generation Sequencing of an 88-Year-Old Specimen of the Poorly Known Species Liagora japonica (Nemaliales, Rhodophyta) Supports the Recognition of Otohimella gen. nov. |
title_full_unstemmed | Next-Generation Sequencing of an 88-Year-Old Specimen of the Poorly Known Species Liagora japonica (Nemaliales, Rhodophyta) Supports the Recognition of Otohimella gen. nov. |
title_short | Next-Generation Sequencing of an 88-Year-Old Specimen of the Poorly Known Species Liagora japonica (Nemaliales, Rhodophyta) Supports the Recognition of Otohimella gen. nov. |
title_sort | next-generation sequencing of an 88-year-old specimen of the poorly known species liagora japonica (nemaliales, rhodophyta) supports the recognition of otohimella gen. nov. |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4936710/ https://www.ncbi.nlm.nih.gov/pubmed/27388436 http://dx.doi.org/10.1371/journal.pone.0158944 |
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