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The Nuclear DNA Content and Genetic Diversity of Lampetra morii
We investigated the nuclear DNA content and genetic diversity of a river lamprey, the Korean lamprey Lampetra morii, which is distributed in the northeast of China. L. morii spends its whole life cycle in fresh water, and its adult size is relatively small (~160 mm long) compared with that of other...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2016
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4936738/ https://www.ncbi.nlm.nih.gov/pubmed/27388621 http://dx.doi.org/10.1371/journal.pone.0157494 |
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author | Yan, Xinyu Meng, Wenbin Wu, Fenfang Xu, Anlong Chen, Shangwu Huang, Shengfeng |
author_facet | Yan, Xinyu Meng, Wenbin Wu, Fenfang Xu, Anlong Chen, Shangwu Huang, Shengfeng |
author_sort | Yan, Xinyu |
collection | PubMed |
description | We investigated the nuclear DNA content and genetic diversity of a river lamprey, the Korean lamprey Lampetra morii, which is distributed in the northeast of China. L. morii spends its whole life cycle in fresh water, and its adult size is relatively small (~160 mm long) compared with that of other lampreys. The haploid nuclear DNA content of L. morii is 1.618 pg (approximately 1.582 Gb) in germline cells, and there is ~15% germline DNA loss in somatic cells. These values are significantly smaller than those of Petromyzon marinus, a lamprey with a published draft genome. The chromosomes of L. morii are small and acrocentric, with a diploid modal number of 2n = 132, lower than some other lampreys. Sequence and AFLP analyses suggest that the allelic polymorphism rate (~0.14% based on examined nuclear and mitochondrial DNA sequences) of L. morii is much lower than that (~2%) of P. marinus. Phylogenetic analysis based on a mitochondrial DNA fragment confirms that L. morii belongs to the genus Lampetra, which, together with the genus Lethenteron, forms a sister group to P. marinus. These genetic background data are valuable for subsequent genetic and genomic research on L. morii. |
format | Online Article Text |
id | pubmed-4936738 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-49367382016-07-22 The Nuclear DNA Content and Genetic Diversity of Lampetra morii Yan, Xinyu Meng, Wenbin Wu, Fenfang Xu, Anlong Chen, Shangwu Huang, Shengfeng PLoS One Research Article We investigated the nuclear DNA content and genetic diversity of a river lamprey, the Korean lamprey Lampetra morii, which is distributed in the northeast of China. L. morii spends its whole life cycle in fresh water, and its adult size is relatively small (~160 mm long) compared with that of other lampreys. The haploid nuclear DNA content of L. morii is 1.618 pg (approximately 1.582 Gb) in germline cells, and there is ~15% germline DNA loss in somatic cells. These values are significantly smaller than those of Petromyzon marinus, a lamprey with a published draft genome. The chromosomes of L. morii are small and acrocentric, with a diploid modal number of 2n = 132, lower than some other lampreys. Sequence and AFLP analyses suggest that the allelic polymorphism rate (~0.14% based on examined nuclear and mitochondrial DNA sequences) of L. morii is much lower than that (~2%) of P. marinus. Phylogenetic analysis based on a mitochondrial DNA fragment confirms that L. morii belongs to the genus Lampetra, which, together with the genus Lethenteron, forms a sister group to P. marinus. These genetic background data are valuable for subsequent genetic and genomic research on L. morii. Public Library of Science 2016-07-07 /pmc/articles/PMC4936738/ /pubmed/27388621 http://dx.doi.org/10.1371/journal.pone.0157494 Text en © 2016 Yan et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Article Yan, Xinyu Meng, Wenbin Wu, Fenfang Xu, Anlong Chen, Shangwu Huang, Shengfeng The Nuclear DNA Content and Genetic Diversity of Lampetra morii |
title | The Nuclear DNA Content and Genetic Diversity of Lampetra morii |
title_full | The Nuclear DNA Content and Genetic Diversity of Lampetra morii |
title_fullStr | The Nuclear DNA Content and Genetic Diversity of Lampetra morii |
title_full_unstemmed | The Nuclear DNA Content and Genetic Diversity of Lampetra morii |
title_short | The Nuclear DNA Content and Genetic Diversity of Lampetra morii |
title_sort | nuclear dna content and genetic diversity of lampetra morii |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4936738/ https://www.ncbi.nlm.nih.gov/pubmed/27388621 http://dx.doi.org/10.1371/journal.pone.0157494 |
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