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The Nuclear DNA Content and Genetic Diversity of Lampetra morii

We investigated the nuclear DNA content and genetic diversity of a river lamprey, the Korean lamprey Lampetra morii, which is distributed in the northeast of China. L. morii spends its whole life cycle in fresh water, and its adult size is relatively small (~160 mm long) compared with that of other...

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Autores principales: Yan, Xinyu, Meng, Wenbin, Wu, Fenfang, Xu, Anlong, Chen, Shangwu, Huang, Shengfeng
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4936738/
https://www.ncbi.nlm.nih.gov/pubmed/27388621
http://dx.doi.org/10.1371/journal.pone.0157494
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author Yan, Xinyu
Meng, Wenbin
Wu, Fenfang
Xu, Anlong
Chen, Shangwu
Huang, Shengfeng
author_facet Yan, Xinyu
Meng, Wenbin
Wu, Fenfang
Xu, Anlong
Chen, Shangwu
Huang, Shengfeng
author_sort Yan, Xinyu
collection PubMed
description We investigated the nuclear DNA content and genetic diversity of a river lamprey, the Korean lamprey Lampetra morii, which is distributed in the northeast of China. L. morii spends its whole life cycle in fresh water, and its adult size is relatively small (~160 mm long) compared with that of other lampreys. The haploid nuclear DNA content of L. morii is 1.618 pg (approximately 1.582 Gb) in germline cells, and there is ~15% germline DNA loss in somatic cells. These values are significantly smaller than those of Petromyzon marinus, a lamprey with a published draft genome. The chromosomes of L. morii are small and acrocentric, with a diploid modal number of 2n = 132, lower than some other lampreys. Sequence and AFLP analyses suggest that the allelic polymorphism rate (~0.14% based on examined nuclear and mitochondrial DNA sequences) of L. morii is much lower than that (~2%) of P. marinus. Phylogenetic analysis based on a mitochondrial DNA fragment confirms that L. morii belongs to the genus Lampetra, which, together with the genus Lethenteron, forms a sister group to P. marinus. These genetic background data are valuable for subsequent genetic and genomic research on L. morii.
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spelling pubmed-49367382016-07-22 The Nuclear DNA Content and Genetic Diversity of Lampetra morii Yan, Xinyu Meng, Wenbin Wu, Fenfang Xu, Anlong Chen, Shangwu Huang, Shengfeng PLoS One Research Article We investigated the nuclear DNA content and genetic diversity of a river lamprey, the Korean lamprey Lampetra morii, which is distributed in the northeast of China. L. morii spends its whole life cycle in fresh water, and its adult size is relatively small (~160 mm long) compared with that of other lampreys. The haploid nuclear DNA content of L. morii is 1.618 pg (approximately 1.582 Gb) in germline cells, and there is ~15% germline DNA loss in somatic cells. These values are significantly smaller than those of Petromyzon marinus, a lamprey with a published draft genome. The chromosomes of L. morii are small and acrocentric, with a diploid modal number of 2n = 132, lower than some other lampreys. Sequence and AFLP analyses suggest that the allelic polymorphism rate (~0.14% based on examined nuclear and mitochondrial DNA sequences) of L. morii is much lower than that (~2%) of P. marinus. Phylogenetic analysis based on a mitochondrial DNA fragment confirms that L. morii belongs to the genus Lampetra, which, together with the genus Lethenteron, forms a sister group to P. marinus. These genetic background data are valuable for subsequent genetic and genomic research on L. morii. Public Library of Science 2016-07-07 /pmc/articles/PMC4936738/ /pubmed/27388621 http://dx.doi.org/10.1371/journal.pone.0157494 Text en © 2016 Yan et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Yan, Xinyu
Meng, Wenbin
Wu, Fenfang
Xu, Anlong
Chen, Shangwu
Huang, Shengfeng
The Nuclear DNA Content and Genetic Diversity of Lampetra morii
title The Nuclear DNA Content and Genetic Diversity of Lampetra morii
title_full The Nuclear DNA Content and Genetic Diversity of Lampetra morii
title_fullStr The Nuclear DNA Content and Genetic Diversity of Lampetra morii
title_full_unstemmed The Nuclear DNA Content and Genetic Diversity of Lampetra morii
title_short The Nuclear DNA Content and Genetic Diversity of Lampetra morii
title_sort nuclear dna content and genetic diversity of lampetra morii
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4936738/
https://www.ncbi.nlm.nih.gov/pubmed/27388621
http://dx.doi.org/10.1371/journal.pone.0157494
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