Cargando…

In silico search, characterization and validation of new EST-SSR markers in the genus Prunus

BACKGROUND: Simple sequence repeats (SSRs) are defined as sequence repeat units between 1 and 6 bp that occur in both coding and non-coding regions abundant in eukaryotic genomes, which may affect the expression of genes. In this study, expressed sequence tags (ESTs) of eight Prunus species were ana...

Descripción completa

Detalles Bibliográficos
Autores principales:	Sorkheh, Karim, Prudencio, Angela S., Ghebinejad, Azim, Dehkordi, Mehrana Kohei, Erogul, Deniz, Rubio, Manuel, Martínez-Gómez, Pedro
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	BioMed Central 2016
Materias:	Research Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4937603/ https://www.ncbi.nlm.nih.gov/pubmed/27389023 http://dx.doi.org/10.1186/s13104-016-2143-y

Ejemplares similares

Comparison of traditional and new generation DNA markers declares high genetic diversity and differentiated population structure of wild almond species
por: Sorkheh, Karim, et al.
Publicado: (2017)

Retraction Note: Comparison of traditional and new generation DNA markers declares high genetic diversity and differentiated population structure of wild almond species
por: Sorkheh, Karim, et al.
Publicado: (2020)

EST and EST-SSR marker resources for Iris
por: Tang, Shunxue, et al.
Publicado: (2009)

Isolation and characterization of 22 EST-SSR markers for the genus Thujopsis (Cupressaceae)(1)
por: Sato, Miyako, et al.
Publicado: (2015)

Development of Capsicum EST–SSR markers for species identification and in silico mapping onto the tomato genome sequence
por: Shirasawa, Kenta, et al.
Publicado: (2012)

Development of EST-SSR markers of Ipomoea nil
por: Ly, Tong, et al.
Publicado: (2012)

Development and characterization of EST‐SSR markers for Camellia reticulata
por: Tong, Yan, et al.
Publicado: (2020)

Fingerprinting of Plum (Prunus domestica) Genotypes in Lithuania Using SSR Markers
por: Antanynienė, Raminta, et al.
Publicado: (2023)

Developmenrt of EST-SSR and genomic-SSR markers to assess genetic diversity in Jatropha Curcas L.
por: Wen, Mingfu, et al.
Publicado: (2010)

Development and Characterization of Polymorphic EST-SSR and Genomic SSR Markers for Tibetan Annual Wild Barley
por: Zhang, Mian, et al.
Publicado: (2014)

Exploiting the Transcriptome of Euphrates Poplar, Populus euphratica (Salicaceae) to Develop and Characterize New EST-SSR Markers and Construct an EST-SSR Database
por: Du, Fang K., et al.
Publicado: (2013)

Development and characterization of EST-SSR markers in Ostryopsis (Betulaceae)(1)
por: Liu, Bing-Bing, et al.
Publicado: (2014)

Isolation and identification of EST‐SSR markers in Ixonanthes chinensis (Ixonanthaceae)
por: Guo, Wei, et al.
Publicado: (2019)

Development of 16 novel EST-SSR markers for species identification and cross-genus amplification in sambar, sika, and red deer
por: Hsiao, Chen, et al.
Publicado: (2022)

Mining and validating grape (Vitis L.) ESTs to develop EST-SSR markers for genotyping and mapping
por: Huang, Hong, et al.
Publicado: (2010)

Towards an efficient computational mining approach to identify EST-SSR markers
por: Sahu, Jagajjit, et al.
Publicado: (2012)

Development of genomic and EST-SSR markers in radish (Raphanus sativus L.)
por: Nakatsuji, Ryoichi, et al.
Publicado: (2011)

Development and characterization of EST-SSR markers in Bombax ceiba (Malvaceae)(1)
por: Ju, Miao-Miao, et al.
Publicado: (2015)

Development and characterization of EST-SSR markers for Catalpa bungei (Bignoniaceae)(1)
por: Wang, Peng, et al.
Publicado: (2016)

Development and characterization of EST-SSR markers for Artocarpus hypargyreus (Moraceae)(1)
por: Liu, Haijun, et al.
Publicado: (2016)

Systemic Identification of Hevea brasiliensis EST-SSR Markers and Primer Screening
por: Hou, Benjun, et al.
Publicado: (2017)

Isolation and identification of EST-SSR markers in Chunia bucklandioides (Hamamelidaceae)(1)
por: Meng, Kaikai, et al.
Publicado: (2016)

Characterization of the Lycium barbarum fruit transcriptome and development of EST-SSR markers
por: Chen, Chunling, et al.
Publicado: (2017)

Development and characterization of polymorphic EST‐SSR markers for Paphiopedilum henryanum (Orchidaceae)
por: Xu, Yufeng, et al.
Publicado: (2018)

Development and validation of EST-SSR markers for Fokienia hodginsii (Cupressaceae)(1)
por: Ding, Mingyan, et al.
Publicado: (2017)

Development and characterization of EST-SSR markers for Begonia luzhaiensis (Begoniaceae)(1)
por: Tseng, Yu-Hsin, et al.
Publicado: (2017)

Development and characterization of EST-SSR markers in Stipa breviflora (Poaceae)(1)
por: Ren, Jing, et al.
Publicado: (2017)

Transcriptome analysis and development of EST-SSR markers in Anoectochilus emeiensis (Orchidaceae)
por: Lu, Song
Publicado: (2022)

Exploiting EST databases for the development and characterization of EST-SSR markers in castor bean (Ricinus communis L.)
por: Qiu, Lijun, et al.
Publicado: (2010)

First genetic linkage map of Taraxacum koksaghyz Rodin based on AFLP, SSR, COS and EST-SSR markers
por: Arias, Marina, et al.
Publicado: (2016)

Isolation and characterization of SSR and EST‐SSR loci in Chamaecyparis formosensis (Cupressaceae)
por: Huang, Chiun‐Jr, et al.
Publicado: (2018)

In silico comparative analysis of SSR markers in plants
por: Victoria, Filipe C, et al.
Publicado: (2011)

A genetic linkage map for a Full sib population of Eucalyptus grandis using SSR, DArT, CG-SSR and EST-SSR markers
por: García, Martín, et al.
Publicado: (2011)

Generation of ESTs for Flowering Gene Discovery and SSR Marker Development in Upland Cotton
por: Lai, Deyong, et al.
Publicado: (2011)

Characterization of variable EST SSR markers for Norway spruce (Picea abies L.)
por: Fluch, Silvia, et al.
Publicado: (2011)

Characterization and development of EST-derived SSR markers in cultivated sweetpotato (Ipomoea batatas)
por: Wang, Zhangying, et al.
Publicado: (2011)

Novel and Stress Relevant EST Derived SSR Markers Developed and Validated in Peanut
por: Bosamia, Tejas C., et al.
Publicado: (2015)

Development of EST-SSR markers for the invasive plant Tithonia diversifolia (Asteraceae)(1)
por: Luo, Landi, et al.
Publicado: (2016)

Development and characterization of novel EST-SSR markers for Speranskia tuberculata (Euphorbiaceae)(1)
por: Fu, Yi, et al.
Publicado: (2016)

ESAP plus: a web-based server for EST-SSR marker development
por: Ponyared, Piyarat, et al.
Publicado: (2016)

Cannot write session to /tmp/vufind_sessions/sess_4aij92smvqvrjdphs0ut147ab2