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An external validation of models to predict the onset of chronic kidney disease using population-based electronic health records from Salford, UK

BACKGROUND: Chronic kidney disease (CKD) is a major and increasing constituent of disease burdens worldwide. Early identification of patients at increased risk of developing CKD can guide interventions to slow disease progression, initiate timely referral to appropriate kidney care services, and sup...

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Autores principales: Fraccaro, Paolo, van der Veer, Sabine, Brown, Benjamin, Prosperi, Mattia, O’Donoghue, Donal, Collins, Gary S., Buchan, Iain, Peek, Niels
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4940699/
https://www.ncbi.nlm.nih.gov/pubmed/27401013
http://dx.doi.org/10.1186/s12916-016-0650-2
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author Fraccaro, Paolo
van der Veer, Sabine
Brown, Benjamin
Prosperi, Mattia
O’Donoghue, Donal
Collins, Gary S.
Buchan, Iain
Peek, Niels
author_facet Fraccaro, Paolo
van der Veer, Sabine
Brown, Benjamin
Prosperi, Mattia
O’Donoghue, Donal
Collins, Gary S.
Buchan, Iain
Peek, Niels
author_sort Fraccaro, Paolo
collection PubMed
description BACKGROUND: Chronic kidney disease (CKD) is a major and increasing constituent of disease burdens worldwide. Early identification of patients at increased risk of developing CKD can guide interventions to slow disease progression, initiate timely referral to appropriate kidney care services, and support targeting of care resources. Risk prediction models can extend laboratory-based CKD screening to earlier stages of disease; however, to date, only a few of them have been externally validated or directly compared outside development populations. Our objective was to validate published CKD prediction models applicable in primary care. METHODS: We synthesised two recent systematic reviews of CKD risk prediction models and externally validated selected models for a 5-year horizon of disease onset. We used linked, anonymised, structured (coded) primary and secondary care data from patients resident in Salford (population ~234 k), UK. All adult patients with at least one record in 2009 were followed-up until the end of 2014, death, or CKD onset (n = 178,399). CKD onset was defined as repeated impaired eGFR measures over a period of at least 3 months, or physician diagnosis of CKD Stage 3–5. For each model, we assessed discrimination, calibration, and decision curve analysis. RESULTS: Seven relevant CKD risk prediction models were identified. Five models also had an associated simplified scoring system. All models discriminated well between patients developing CKD or not, with c-statistics around 0.90. Most of the models were poorly calibrated to our population, substantially over-predicting risk. The two models that did not require recalibration were also the ones that had the best performance in the decision curve analysis. CONCLUSIONS: Included CKD prediction models showed good discriminative ability but over-predicted the actual 5-year CKD risk in English primary care patients. QKidney, the only UK-developed model, outperformed the others. Clinical prediction models should be (re)calibrated for their intended uses. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1186/s12916-016-0650-2) contains supplementary material, which is available to authorized users.
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spelling pubmed-49406992016-07-13 An external validation of models to predict the onset of chronic kidney disease using population-based electronic health records from Salford, UK Fraccaro, Paolo van der Veer, Sabine Brown, Benjamin Prosperi, Mattia O’Donoghue, Donal Collins, Gary S. Buchan, Iain Peek, Niels BMC Med Research Article BACKGROUND: Chronic kidney disease (CKD) is a major and increasing constituent of disease burdens worldwide. Early identification of patients at increased risk of developing CKD can guide interventions to slow disease progression, initiate timely referral to appropriate kidney care services, and support targeting of care resources. Risk prediction models can extend laboratory-based CKD screening to earlier stages of disease; however, to date, only a few of them have been externally validated or directly compared outside development populations. Our objective was to validate published CKD prediction models applicable in primary care. METHODS: We synthesised two recent systematic reviews of CKD risk prediction models and externally validated selected models for a 5-year horizon of disease onset. We used linked, anonymised, structured (coded) primary and secondary care data from patients resident in Salford (population ~234 k), UK. All adult patients with at least one record in 2009 were followed-up until the end of 2014, death, or CKD onset (n = 178,399). CKD onset was defined as repeated impaired eGFR measures over a period of at least 3 months, or physician diagnosis of CKD Stage 3–5. For each model, we assessed discrimination, calibration, and decision curve analysis. RESULTS: Seven relevant CKD risk prediction models were identified. Five models also had an associated simplified scoring system. All models discriminated well between patients developing CKD or not, with c-statistics around 0.90. Most of the models were poorly calibrated to our population, substantially over-predicting risk. The two models that did not require recalibration were also the ones that had the best performance in the decision curve analysis. CONCLUSIONS: Included CKD prediction models showed good discriminative ability but over-predicted the actual 5-year CKD risk in English primary care patients. QKidney, the only UK-developed model, outperformed the others. Clinical prediction models should be (re)calibrated for their intended uses. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1186/s12916-016-0650-2) contains supplementary material, which is available to authorized users. BioMed Central 2016-07-12 /pmc/articles/PMC4940699/ /pubmed/27401013 http://dx.doi.org/10.1186/s12916-016-0650-2 Text en © The Author(s). 2016 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.
spellingShingle Research Article
Fraccaro, Paolo
van der Veer, Sabine
Brown, Benjamin
Prosperi, Mattia
O’Donoghue, Donal
Collins, Gary S.
Buchan, Iain
Peek, Niels
An external validation of models to predict the onset of chronic kidney disease using population-based electronic health records from Salford, UK
title An external validation of models to predict the onset of chronic kidney disease using population-based electronic health records from Salford, UK
title_full An external validation of models to predict the onset of chronic kidney disease using population-based electronic health records from Salford, UK
title_fullStr An external validation of models to predict the onset of chronic kidney disease using population-based electronic health records from Salford, UK
title_full_unstemmed An external validation of models to predict the onset of chronic kidney disease using population-based electronic health records from Salford, UK
title_short An external validation of models to predict the onset of chronic kidney disease using population-based electronic health records from Salford, UK
title_sort external validation of models to predict the onset of chronic kidney disease using population-based electronic health records from salford, uk
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4940699/
https://www.ncbi.nlm.nih.gov/pubmed/27401013
http://dx.doi.org/10.1186/s12916-016-0650-2
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